香菇降解柠条基质关键基因挖掘OA
Mining of Key Genes Involved in Degradation of Caragana korshinskii by Lentinula edodes
以杂木屑为对照,探究柠条木屑添加量对香菇(Lentinula edodes)生长发育和营养成分的影响规律,通过加权基因共表达网络分析(weighted gene co-expression network analysis,WGCNA)挖掘香菇不同生长期相关的功能基因,筛选出木质纤维素降解核心基因,为深入解析香菇降解柠条基质的分子机制提供参考.结果表明:N3(30%柠条木屑)组香菇的产量最高,每棒为70.62 g,比对照组高41.2%;N3组的子实体蛋白和灰分含量最高,N2(20%柠条木屑)组子实体中脂肪含量最低,N1(10%柠条木屑)组子实体总氨基酸含量最高;找到5个与香菇生长密切相关的基因模块,其中Red模块(1 257个基因)与褐变期正相关,Brown模块(1 543个基因)与褐变期负相关,Greenyellow(136个基因)和Blue模块(2 062个基因)与子实体期正相关,Turquoise模块(6 132个基因)与子实体期负相关.功能基因富集分析发现:褐变期丙酮酸代谢、精氨酸和脯氨酸代谢、柠檬酸循环等代谢途径显著富集;子实体期淀粉和蔗糖代谢、青霉素和头孢菌素生物合成、其他聚糖降解等代谢途径显著富集.选出2个可能与木质纤维素降解相关的基因CYP450和GH,以及ACPT、2-NPD、PTP1B、HLYD、VPS14C、MetE等18个可能与香菇生长发育密切相关的基因.研究结果可为深入解析香菇木质纤维素降解分子机制提供参考.
Caragana korshinskii wood chips were used in replacement of traditional mixed wood chips(CK)at different proportions(10%,20%,30%)in Lentinula edodes culture substrate.The effects of the amount of C.korshinskii wood chips in the substrate were investigated on the growth,development,and nutritional components of L.edodes.Weighted gene co-expression network analysis(WGCNA)was used to identify functional genes associated with different developmental stages and to screen for core genes involved in lignocellulose degradation,thereby providing a reference for elucidating the molecular mechanisms underlying degradation of C.korshinskii by L.edodes.The results showed that the 30%C.korshinskii(N3)group achieved the highest yield,reaching 70.62 g per cultivation bag,which was 41.2%higher than that of the CK.The N3 group also resulted in the highest protein and ash contents in the fruiting bodies,while the 20%C.korshinskii(N2)group had the lowest fat content,and the 10%C.korshinskii(N1)group showed the highest total amino acid content.Five gene modules closely related to the growth of L.edodes were identified by WGCNA:the Red module(1 257 genes)was positively correlated with the browning stage;the Brown module(1 543 genes)was negatively correlated with the browning stage;the Greenyellow module(136 genes)and Blue module(2 062)were positively correlated with the fruiting body stage;and the Turquoise module(6 132 genes)was negatively correlated with the fruiting body stage.Functional gene enrichment analysis revealed significant metabolic pathways such as pyruvate metabolism,arginine and proline metabolism,and the citric acid cycle during the browning stage,while metabolic pathways such as starch and sucrose metabolism,penicillin and cephalosporin biosynthesis,and other glycan degradation were significantly enriched during the fruiting body stage.Two genes potentially involved in lignocellulose degradation,CYP450 and GH,were selected,along with 18 genes(ACPT,2-NPD,PTP1B,HLYD,VPS14C,MetE,etc.)possibly closely related to the growth and development of L.edodes.These findings provided a reference for in-depth study of the molecular mechanisms of lignocellulose degradation in L.edodes.
徐鸿雁;孟清;李艳艳;刘菲燕;李松龄;张洋;王亚艺
青海大学农林科学院,青海西宁 810016青海大学农林科学院,青海西宁 810016青海大学农林科学院,青海西宁 810016青海大学农林科学院,青海西宁 810016青海大学农林科学院,青海西宁 810016青海大学农林科学院,青海西宁 810016青海大学农林科学院,青海西宁 810016
转录组加权基因共表达网络分析关键基因营养成分柠条基质
Transcriptomeweighted gene co-expression network analysiskey genesnutritional componentsCaragana korshinskii-based substrate
《食用菌学报》 2026 (2)
1-23,23
青海省农林科学院创新基金(2022-NKY-03)青海省科技计划(2023-ZJ-968Q)青海省农林科学院创新基金(2023-NKY-01)
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