八种食用豆耐热基因家族的比较基因组学解析与耐热性评价指标初探OA
Comparative Genomics Dissection of Heat-Tolerance Gene Families in Eight Food Legumes and a Preliminary Exploration of Heat-Tolerance Evaluation Indices
全球变暖背景下,高温已成为限制食用豆产量与品质的主要非生物胁迫因素之一.为研究食用豆基因与耐热性的关联,以完成高质量基因组测序的8种代表性食用豆(鹰嘴豆、木豆、豌豆、菜豆、赤豆、蚕豆、绿豆、豇豆)为对象,整合比较基因组学、启动子顺式元件及进化分析,系统解析耐热基因(HSF、HSP20、HSP60、HSP70、HSP90)的组成、表达调控及物种间保守性,阐明耐热基因密度、GC含量与生态型分化之间的内在关联.结果表明,热季豆类(赤豆、绿豆、豇豆、木豆)的耐热基因密度显著高于暖季及冷季豆类;HSF与HSP20的GC含量在冷季豆中显著偏低,提示其经历了更强的GC定向选择;启动子区普遍包含光响应、激素响应与胁迫响应元件,且物种间分布高度一致;共线性分析显示所有耐热基因均受纯化选择.进一步筛选到10个高GC含量HSP20基因,其中部分基因在高温胁迫下可被诱导表达,可作为耐热育种优先靶标.本研究结果为食用豆耐热育种提供了关键基因资源与分子标记,也为气候变化下的作物布局提供了参考.
With global warming,high temperature has emerged as one of the principal abiotic stresses constraining the yield and quality of food legumes.To decipher the genetic basis underlying heat tolerance in food legumes,eight representative legume species with high-quality genome assemblies(chickpea,pigeonpea,pea,common bean,adzuki bean,faba bean,mung bean and cowpea)were selected.Through integrated comparative genomics,promoter cis-element analysis,and evolutionary analyses,this study systematically characterized the gene family composition,transcriptional regulation pattern,and inter-specific conservation of heat-tolerance genes(HSF,HSP20,HSP60,HSP70,HSP90),and elucidated the intrinsic associations among these heat-tolerance gene density,GC content,and ecotypic differentiation.The results demonstrated that heat-season legumes(adzuki bean,mung bean,cowpea and pigeonpea)exhibited significantly higher densities of heat-tolerance genes compared to warm-and cool-season legumes.The GC contents of HSF and HSP20 gene families were markedly lower in cool-season legumes,indicating stronger directional selection has acted on GC content in response to thermal stress.The promoter regions of these heat-tolerance genes universally harbored light-,hormone-and stress-responsive cis-elements,whose distribution patterns were highly conserved across the eight legume species.Synteny analyses further revealed that all identified heat-tolerance genes were under purifying selection,reflecting their functional conservation during evolution.Ten HSP20 members with high GC content were prioritized as key candidate genes,and several of these genes were confirmed to be heat-inducible,representing high-priority targets for heat-tolerance breeding.Collectively,this study provides valuable gene resources and reliable molecular markers for food legumes improvement,while offering scientific guidance for rational crop variety deployment and cultivation zoning in the context of global climate change.
李程勋;徐晓俞;李爱萍
福建省农业科学院作物研究所/福建省特色旱作物品种选育工程技术研究中心,福建 福州 350013福建省农业科学院作物研究所/福建省特色旱作物品种选育工程技术研究中心,福建 福州 350013福建省农业科学院作物研究所/福建省特色旱作物品种选育工程技术研究中心,福建 福州 350013
农业科技
食用豆耐热基因GC含量顺式作用元件共线性分析
food legumesheat-tolerance genesGC contentcis-elementssynteny analysis
《核农学报》 2026 (11)
2144-2153,10
福建省公益类科研院所专项(2024R10300010),福建省农业科学院科技创新团队(CXTD2021011-2),"5511"协同创新工程(XTCXGC2021019)
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