基于转录组数据与机器学习的非小细胞肺癌放疗敏感性基因筛选及预后模型建立OA
Identification of radiotherapy sensitivity-associated genes and construc-tion of a prognostic model for non-small cell lung cancer based on tran-scriptomic data and machine learning
目的 利用公开数据库和机器学习算法筛选与非小细胞肺癌(NSCLC)放疗预后相关的关键基因,并构建风险预测模型.方法 从表达谱数据库(GEO)提取放疗相关数据集(GSE197236、GSE253564),进行差异分析获取共同放疗相关基因(RRGs)并富集功能注释探究生物学功能.在癌症基因图谱(TCGA)中纳入接受放疗的175例NSCLC患者,运用三种机器学习算法筛选总生存期(OS)相关的核心基因.通过生存分析及Cox回归评估预后价值,并构建风险评分模型验证其预测能力.结果 共识别出58个差异RRGs,主要富集于细胞周期、有丝分裂等通路.三种机器学习算法筛选共6个核心RRGs,生存分析显示BCL2L15、CENPE、KRT6A和FGA的高表达与更好的OS相关,而MSMB和HIST1H3G的高表达预示更差的OS(P<0.05);多因素分析结果显示其中FGA、BCL2L15、KRT6A为独立预后因子(P<0.05).风险预测模型在1、3、5年OS预测的AUC分别为0.745、0.752和0.706.结论 研究整合多维数据筛选出6个与NSCLC放疗相关的关键基因,并构建了具有良好预测性能的风险模型,可为放疗决策与个体化治疗提供依据.
Objective To identify key genes associated with radiotherapy prognosis in non-small cell lung cancer(NSCLC)and construct a risk prediction model using public datasets and machine learning algorithms.Methods Radiotherapy-relat-ed datasets(GSE197236,GSE253564)were obtained from the GEO database.Common radiation response genes(RRGs)were identified through differential expression analysis and functional enrichment.In the TCGA cohort of 175 NSCLC patients treated with radiotherapy,three machine learning algorithms were applied to screen overall survival(OS)-related RRGs.Prognostic value was assessed using survival analysis and multivariate Cox regression,and a risk score model was developed and validated.Results Fifty-eight differential RRGs were identified,mainly enriched in cell cycle and mitosis pathways.Six key RRGs were selected via three machine learning algorithms.High expression of BCL2L15,CENPE,KRT6A,and FGA was associated with better OS,while MSMB and HIST1H3G indicated worse OS(P<0.05).Multivariate analysis results showed that FGA,BCL2L15,and KRT6A were independent prognostic factors(P<0.05).The risk model demonstrated good predictive performance,with AUC of 0.745,0.752,and 0.706 for 1-year,3-year,and 5-year OS,respectively.Conclusion This study identified six radiotherapy-related genes and established a validated prognostic model,providing a potential tool for assessing radiosensitivity and guiding personalized treatment in NSCLC.
武小玲;罗宏;柏社香;赵培培
江苏省盐城市第二人民医院放疗科,江苏盐城 224000江苏省盐城市第二人民医院肿瘤科,江苏盐城 224000江苏省盐城市第二人民医院放疗科,江苏盐城 224000江苏省盐城市第二人民医院放疗科,江苏盐城 224000
医药卫生
非小细胞肺癌机器学习放射治疗生物标志物
Non-small cell lung cancerMachine learningRadiotherapyBiomarkers
《中国当代医药》 2026 (24)
1-6,6
江苏省盐城市科技计划项目(YCBK2024076)江苏省盐城市卫生健康委员会医学科研项目(YK2024140).
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