陆地棉产量相关性状QTL的Meta分析及候选基因鉴定OA
Meta-analysis of QTL for yield-related traits in upland cotton and identifica-tion of candidate genes
产量是陆地棉遗传改良与品种选育的首要目标性状之一.定位陆地棉产量相关数量性状位点(QTL)并挖掘其候选基因,对于通过分子育种手段提升棉花产量潜力具有重要意义.整合已报道的QTL以鉴定控制陆地棉产量相关性状的稳定主效QTL和候选基因,是开展棉花产量相关性状分子改良的基础和关键.本研究基于 42 项独立研究,共收集了 3366 个与 11 个产量相关性状相关的原始 QTL.利用 11,242 个标记构建共识遗传图谱,将上述原始 QTL中2751 个投影至共识遗传图谱上,鉴定出 209 个与产量性状相关的Meta-QTL(MQTL).其中 61 个MQTL区域得到全基因组关联分析(GWAS)中显著 SNP 位点的验证.在这些经 GWAS 共定位的 MQTL 中,鉴定到一个主效 MQTL(MQTL6),表型变异解释率(R2)最高为 18.36%、整合初始QTL数量为 24 个、置信区间(CI)缩小至 2.7 cM.结合转录组测序(RNA-seq)与实时荧光定量 PCR(RT-qPCR)分析,从 MQTL6 区间内筛选出 2 个与产量密切相关的候选基因GhEB1C和GhHIPP23.通过病毒诱导的基因沉默(VIGS)验证,发现GhEB1C主要调控种子与棉铃发育,而GhHIPP23同时调控种子发育与衣分形成,表明二者在陆地棉产量形成中具有重要调控作用.该研究结果为解析陆地棉产量性状的遗传机制提供了新见解,并为高产棉花品种的分子育种提供了候选基因资源.
Yield is one of the primary target traits in the genetic improvement and variety breeding of upland cotton(Gossypium hirsutum L.).Mapping quantitative trait loci(QTLs)related to yield and mining candidate genes is of great significance for en-hancing cotton yield potential through molecular breeding.Integrating reported QTLs to identify stable and major-effect QTLs and candidate genes controlling yield-related traits in upland cotton serves as the foundation and key for molecular improvement of cotton yield traits.In this study,based on 42 independent studies,a total of 3366 original QTLs related to 11 yield-related traits were collected.Using 11,242 markers,a consensus genetic map was constructed,onto which 2751 of the original QTLs were projected,leading to the identification of 209 Meta-QTLs(MQTLs)for yield traits.Among these,61 MQTL regions were vali-dated by significant SNP loci from genome-wide association studies(GWAS).Within these GWAS-co-localized MQTLs,a ma-jor-effect MQTL(MQTL6)was identified with the highest phenotypic variation explained(R2)of 18.36%,integrating 24 original quantitative PCR(RT-qPCR)analyses,two candidate genes closely related to yield,GhEB1C and GhHIPP23,were screened from the MQTL6 interval.Through virus-induced gene silencing(VIGS)validation,it was found that GhEB1C primarily regulates seed and boil development,whereas GhHIPP23 simutaneously regulates seed development and lint percentage formation,indicating that both play key regulatory roles in in yield formation in upland cotton.These findings provide new insights into the genetic mechanisms underlying yield traits in upland cotton and offer candidate gene resources for molecular breeding of high-yielding cotton varieties.
赵岩;王彩香;马雄风;宿俊吉;张文姣;杨琦文;魏佳智;俞晓雪;李丹丹;魏楚;冯誉誉;彭佳泺
甘肃农业大学生命科学技术学院,甘肃 兰州 730070甘肃农业大学生命科学技术学院,甘肃 兰州 730070中国农业科学院棉花研究所,河南 安阳 455000甘肃农业大学生命科学技术学院,甘肃 兰州 730070甘肃农业大学生命科学技术学院,甘肃 兰州 730070甘肃农业大学生命科学技术学院,甘肃 兰州 730070甘肃农业大学生命科学技术学院,甘肃 兰州 730070甘肃农业大学生命科学技术学院,甘肃 兰州 730070甘肃农业大学生命科学技术学院,甘肃 兰州 730070甘肃农业大学生命科学技术学院,甘肃 兰州 730070甘肃农业大学生命科学技术学院,甘肃 兰州 730070甘肃农业大学生命科学技术学院,甘肃 兰州 730070
陆地棉MQTL产量GhEB1CGhHIPP23
upland cottonMQTLyieldGhEB1CGhHIPP23
《作物学报》 2026 (9)
2584-2597,14
本研究由国家自然科学基金项目(32572431),新疆自治区重点研发任务专项(2025B02001-2)和新疆棉花产业技术体系建设专项(XJARS-03-06)资助.This study was supported by the National Natural Science Foundation of China(32572431),the Key Research and Development Task Project of Xinjiang Uygur Autonomous Region(2025B02001-2),and the Xinjiang Cotton Industry Technology System(XJARS-03-06).
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