茶树DIR基因家族鉴定及在炭疽病胁迫下表达模式分析OA
Identification and expression pattern analysis of DIR gene family in Camellia sinensis under anthracnose stress
Dirigent(DIR)蛋白在植物体内参与木质素和木脂素的生物合成过程,在植物生长发育和胁迫应答等过程中发挥重要作用.该研究在茶树(Camellia sinensis)全基因组中筛选到 40 个 CsDIR 基因,并对该基因家族的理化性质、系统进化树、保守基序、染色体定位、顺式作用元件结构特征和茶炭疽病胁迫下的基因表达模式进行分析.结果表明:(1)进化分析表明,CsDIR 基因可分为 3 个亚家族,其启动子区域包含生长素、脱落酸、创伤和病原菌等响应元件.(2)蛋白结构及蛋白保守结构域分析表明,40 个 CsDIR 蛋白均含有由 8条反向平行 β-折叠组成的 β-桶.此外,39 个 CsDIR 蛋白含有 Dirigent 结构域,1 个 CsDIR 蛋白含有 Dirigent superfamily 结构域.(3)染色体定位及共线性分析结果表明,40 个 CsDIR 基因分布在 10 条染色体和 5 个不同的 Contig 上,CsDIR 基因家族中有 12 对串联重复基因和 4 对共线性基因.(4)茶炭疽病胁迫下 12 个CsDIR 基因的表达模式分析表明,12 个 CsDIR 基因均响应茶炭疽病胁迫.该研究结果为进一步研究 DIR 基因家族在茶树应对生物胁迫时的功能提供参考.
Dirigent(DIR)proteins play crucial roles in lignin and lignan biosynthesis process,significantly influencing plant growth,development and stress responses.This study identified 40 CsDIR genes through genome-wide screening in Camellia sinensis,and analysed for physicochemical properties,phylogenetic tree,conserved motifs,chromosomal localization,cis-acting element structural features,and gene expression patterns of DIR gene family under tea anthracnose stress.The results were as follows:(1)Phylogenetic analysis showed that the CsDIR genes were divided into three subfamilies,and their promoter regions contained response elements for auxin,abscisic acid,wounding and pathogens.(2)Analysis of protein structures and protein conserved domains confirmed that 40 CsDIRs contained a β-barrel composed of eight antiparallel β-strands.In addition,39 CsDIRs possessed a Dirigent domain,while one contained a Dirigent superfamily domain.(3)Results of chromosomal localization and collinearity analysis indicated that 40 CsDIR genes were distributed across 10 chromosomes and 5 distinct Contigs.Within CsDIR gene family,we identified 12 pairs of tandemly duplicated genes and 4 pairs of collinear genes.(4)Expression pattern analysis of 12 CsDIR genes under tea anthracnose stress demonstrated that all 12 CsDIR genes uniformly responded to tea anthracnose stress.This study provides a foundation for future research on the function of DIR gene family in response to biotic stresses in tea plants.
孙志鹏;赵懿琛
贵州大学 生命科学学院,农业生物工程研究院,山地植物资源保护与种质创新教育部重点实验室,贵阳 550025贵州大学 生命科学学院,农业生物工程研究院,山地植物资源保护与种质创新教育部重点实验室,贵阳 550025||贵州大学 茶学院,贵阳 550025
农业科技
茶树DIR 基因家族结构特征理化特性表达分析
Camellia sinensisDIR gene familystructural featuresphysicochemical propertyexpression analysis
《广西植物》 2026 (8)
1267-1282,16
国家自然科学基金项目(32160077)贵州省科技计划项目(黔农科院人才专项[2024]02).
评论