首页|期刊导航|西北农林科技大学学报(自然科学版)|基于递归特征消除的烟草花叶病高光谱精准识别

基于递归特征消除的烟草花叶病高光谱精准识别OA

Hyperspectral precise detection of tobacco mosaic disease using recursive feature elimination

中文摘要英文摘要

[目的]针对烟草花叶病毒(tobacco mosaic virus,TMV)早期侵染引发的微弱光谱变化难以有效捕捉与可靠判别等问题,构建基于生理敏感特征优选与可解释性机器学习的TMV高光谱精准识别方法体系,为TMV的早期识别与精准防控提供技术支撑.[方法]采集健康与TMV早期侵染烟叶的高光谱(400~1 000 nm)反射数据,经白板校正、感兴趣区域提取等预处理后,计算归一化色素叶绿素指数(normalized pigment chlorophyll index,NPCI)、水分指数(water index,WI)等52个候选植被指数;采用递归特征消除(recursive feature elimination,RFE)筛选最优特征子集;在此基础上构建并对比评估K近邻(K-nearest neighbors,KNN)、支持向量机(support vector machine,SVM)等4类机器学习模型的性能,结合随机搜索与网格搜索优化超参数,并利用独立测试集验证模型泛化能力;进一步引入沙普利加性解释(shapley additive explanations,SHAP),对最优模型进行可解释性分析,量化关键特征对分类决策的贡献.[结果]经RFE筛选得到NPCI与WI双特征子集,证明色素与水分变化是TMV早期识别的关键信息,有效解决了高光谱数据的维数灾难问题.基于双特征子集构建的最佳识别模型KNN,其受试者工作特征曲线下面积(receiver operating characteristic-area under curve,ROC-AUC)、5 折交叉验证准确率(accuracy,ACC)及 F1 分数(balanced F score,F1-score)分别为 0.987,0.955和 0.961;在独立测试集上,ROC-AUC仍达 0.960,泛化性能良好.SHAP分析表明,NPCI与WI为驱动模型决策的核心因子,其值升高会正向推动样本被判定为"TMV侵染",其变化与病毒侵染诱导的叶绿素降解及水分胁迫过程相一致.[结论]仅利用NPCI与WI 2个植被指数即可实现对TMV的早期高精度识别,显著降低了模型复杂度.所提出的"RFE特征优选+KNN+SHAP"方法体系在提升识别性能的同时,揭示了"色素变化为主、水分变化为辅"的早期光谱响应机理,为TMV的早期快速识别及低成本、便携式烟草TMV监测装备的研发提供了参考依据.

[Objective]Aiming to address the challenge of effectively capturing and reliably discriminating the subtle spectral changes caused by early infection of tobacco mosaic virus(TMV),a precise hyperspectral re-cognition framework based on physiologically sensitive feature selection and interpretable machine learning was developed,to provide technical support for early TMV detection and precise control.[Method]Hyperspectral(400-1 000 nm)reflectance data of healthy and early TMV infected tobacco leaves were collected.After pre-treatment with whiteboard correction and region of interest extraction,fifty-two candidate vegetation indices,in-cluding normalized pigment chlorophyll index(NPCI)and water index(WI),were calculated.Recursive feature elimination(RFE)was used to select the optimal feature subset.Based on the selected subset,four categories of machine-learning models,including k-nearest neighbors(KNN)and support vector machine(SVM),were de-veloped and comparatively evaluated.Hyperparameters were optimized using random search and grid search,and model generalization performance was assessed using an independent test set.Furthermore,shapley additive explanations(SHAP)was introduced to interpret the best-performing model by quantifying the contribution of key features to classification decisions.[Result]A dual-feature subset consisting of NPCI and WI was obtained through RFE screening,demonstrating that pigment and water-related changes are key information for early TMV identification,which effectively mitigates the curse of dimensionality in hyperspectral data.The KNN model built on the dual-feature subset achieved the best performance,with receiver operating characteristic-area under curve(ROC-AUC)of 0.987,five-fold cross-validation accuracy(ACC)of 0.955 and balanced F score(F1-score)of 0.961.On the independent test set,the ROC-AUC remained as high as 0.960,indicating good generalization performance.SHAP analysis further showed that NPCI and WI were the dominant drivers of model decision-making:an increase in their values positively drove samples to be classified as"TMV-infected",and its variation was consistent with TMV-induced chlorophyll degradation and water-stress processes.[Con-clusion]Early and precise identification of TMV can be achieved using only two vegetation indices(NPCI and WI),substantially reducing model complexity.The proposed"RFE-based feature selection+KNN+SHAP"methodological framework not only improves identification performance but also reveals an early spectral re-sponse mechanism dominated by pigment changes and supplemented by water status variations.This provides a reference for the early and rapid identification of TMV,as well as for the development of low-cost,portable TMV monitoring equipment for tobacco.

盛鑫;郝兴安;杨照;李顺欣;刘星;冯明晨;毛锐

西北农林科技大学 信息工程学院,陕西 杨凌 712100西北农林科技大学 植物保护学院,陕西 杨凌 712100陕西省烟草公司咸阳市公司,陕西 咸阳 712000西北农林科技大学 信息工程学院,陕西 杨凌 712100西北农林科技大学 信息工程学院,陕西 杨凌 712100西北农林科技大学 信息工程学院,陕西 杨凌 712100西北农林科技大学 信息工程学院,陕西 杨凌 712100||陕西省农业信息智能感知与分析工程技术研究中心,陕西 杨凌 712100

农业科技

烟草花叶病毒早期识别高光谱成像植被指数递归特征消除SHAP可解释性分析

tobacco mosaic virusearly detectionhyperspectral imagingvegetation indicesrecursive fea-ture eliminationshapley additive explanations analysis

《西北农林科技大学学报(自然科学版)》 2026 (9)

67-77,11

中国烟草总公司陕西省公司2024年度科技项目(KJ-2024-06)陕西省秦创原"科学家+工程师"队伍建设项目(2025QCY-KXJ-070)

10.13207/j.jnwafu.2026.09.007

评论