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基于机器学习的甲状腺癌患者肠道微生态特征分析OA

Analysis of gut microecological characteristics in thyroid cancer patients based on machine learning

中文摘要英文摘要

为筛选具有诊断价值的微生物标志物,基于机器学习算法挖掘甲状腺癌患者肠道微生物组特征.从美国国家生物技术信息中心(National Center for Biotechnology Information,NCBI)数据库获取甲状腺癌患者肠道微生物组测序数据,利用Kraken2工具进行物种注释并构建操作分类单元(operational taxonomic unit,OTU)丰度表.应用H2O自动化机器学习平台,集成广义线性模型(generalized linear model,GLM)、分布式随机森林(distributed random forest,DRF)及深度学习(deep learning)等算法筛选关键特征微生物,并结合Wilcoxon秩和检验分析组间丰度差异.经多模型交叉验证筛选模型筛选出萨特氏菌属(Sutterella)、Emergencia、乳球菌属(Lactococcus)及肉食杆菌属(Carnobacterium)等为关键OTU.差异分析显示,与健康对照人群相比,甲状腺癌患者肠道中Sutterella的丰度显著下降(P<0.001),而Emergencia、Lactococcus及Carnobacterium的丰度显著升高(P<0.001).以上结果表明,甲状腺癌患者肠道菌群结构存在特定改变,筛选出的具有诊断价值的微生物,可作为辅助诊断标志物及甲状腺-肠轴(thyroid-gut axis)研究的新靶点.

To identify diagnostic microbial biomarkers,machine learning algorithms were used to analyze the gut microbiome profiles of patients with thyroid cancer.Gut microbiome sequencing data of thyroid cancer were obtained from the National Center for Biotechnology Information(NCBI)database.The Kraken2 tool was used for taxonomic annotation and construction of an operational taxonomic unit(OTU)abundance table.The H2O automated machine learning platform was applied,integrating algorithms such as generalized linear model(GLM),distributed random forest(DRF),and deep learning to screen for key characteristic microorganisms,combined with the Wilcoxon rank-sum test to analyze abundance differences between groups.Through cross-validation across multiple models,key OTUs including Sutterella,Emergencia,Lactococcus,and Carnobacterium were identified.Differential analysis showed that,compared with the healthy control group,the abundance of Sutterella in the gut of thyroid cancer patients was significantly decreased(P<0.001),while the abundances of Emergencia,Lactococcus,and Carnobacterium were significantly increased(P<0.001).These results indicate that specific alterations exist in the gut microbiota structure of thyroid cancer patients.The identified microorganisms may serve as auxiliary diagnostic biomarkers and novel targets for research on thyroid-gut axis.

李涛;罗志宇;丁亚杰

杭州师范大学附属医院,浙江杭州江苏三黍生物科技有限公司,江苏南通上海中医药大学附属龙华医院,上海市中医肿瘤临床医学研究中心,上海

医药卫生

甲状腺癌肠道菌群生物信息学机器学习

thyroid cancergut microbiotabioinformaticsmachine learning

《杭州师范大学学报(自然科学版)》 2026 (4)

392-400,9

国家中医药管理局高水平中医药重点学科建设项目(zyyzdxk-2023063)

10.19926/j.cnki.issn.1674-232X.2026.02.111

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