大豆FBL基因家族鉴定及百粒重相关基因挖掘与单倍型分析OA
Identification of FBL Gene Family,Mining of 100-seed Weight Related Genes and Haplotype Analysis in Soybean
F-box蛋白是真核生物SCF E3 泛素连接酶的重要组成部分,广泛参与植物的生长发育以及胁迫响应.为探究FBL基因家族在大豆百粒重调控过程中的作用,本研究采用生物信息学方法鉴定FBL家族基因,分析其共线性关系、理化性质及保守基序,利用RNA-seq数据分析大豆FBL基因的组织表达模式及籽粒发育前期的表达模式,选取籽粒发育前期特异表达的4 个FBL基因进行qRT-PCR分析和单倍型分析,以阐释大豆FBL基因家族的结构、进化和功能.结果表明:共鉴定到44 个大豆FBL基因,将其命名为GmFBL1~GmFBL44,编码的氨基酸数量为284~650 aa,等电点为5.16~8.99,其保守基序高度相似.物种内共线性分析结果表明该基因家族发生了53 次复制事件,在进化过程中大豆FBL基因出现了分化.基因表达模式分析结果表明FBL基因家族中12 个基因在大豆籽粒中特异表达,其中GmFBL14、GmFBL24、GmFBL25 和GmFBL31 在籽粒发育前期的两个亲本材料中的表达具有差异,其中 GmFBL14和GmFBL25 的表达量呈上升趋势,GmFBL24 和GmFBL31 的表达量先增加后降低.单倍型分析挖掘到GmFBL24 在-386 bp处存在1 处C/G突变,可能参与调控大豆百粒重.研究结果为解析研究大豆FBL基因家族在百粒重调控中的功能提供了理论依据.
F-box proteins are key components of the SCF E3 ubiquitin ligase complex in eukaryotes and are extensively involved in plant growth,development,and stress responses.To investigate the role of the FBL gene family in regulating 100-seed weight in soybean,this study employed bioinformatics methods to identify FBL family genes,analyze their colinearity,physicochemical properties,and conserved motifs,and utilized RNA-seq data to examine the tissue expression patterns and early seed development expression patterns of soybean FBL genes.Four FBL genes specifically expressed during early seed development were selected for qRT-PCR and haplotype analysis to elucidate the structure,evolution,and function of the soybean FBL gene family.The results indicated that 44 soybean FBL genes were identified and named GmFBL1-GmFBL44.The amino acid sequences encoded by GmFBL1-GmFBL44 range from 284 to 650 aa,with isoelectric points ranging from 5.16 to 8.99,and their conserved motifs show high similarity.Intraspecific colinearity analysis revealed 53 duplication events within this gene family,indicating that soybean FBL genes have diverged during evolution.Analysis of gene expression patterns showed that 12 genes in the FBL gene family were specifically expressed in soybean seeds;among them,GmFBL14,GmFBL24,GmFBL25,and GmFBL31 were differentially expressed in the two parental lines during the early stages of seed development;specifically,the expression levels of GmFBL14 and GmFBL25 showed an upward trend,while those of GmFBL24 and GmFBL31 first increased and then decreased.Haplotype analysis identified a single C/G mutation at position-386 bp in GmFBL24,which may be involved in regulating soybean 100-seed weight.These findings provide a theoretical basis for functional studies on the role of the soybean FBL gene family in regulating 100-seed weight.
康朝锐;韩佳音;杨明亮;吕子淼;章磊;熊心;蒋洪蔚;陈庆山
东北农业大学 农学院/教育部大豆生物学重点实验室,黑龙江 哈尔滨 150030东北农业大学 农学院/教育部大豆生物学重点实验室,黑龙江 哈尔滨 150030东北农业大学 农学院/教育部大豆生物学重点实验室,黑龙江 哈尔滨 150030吉林省农业科学院(中国农业科技东北创新中心),吉林 长春 130033东北农业大学 农学院/教育部大豆生物学重点实验室,黑龙江 哈尔滨 150030东北农业大学 农学院/教育部大豆生物学重点实验室,黑龙江 哈尔滨 150030吉林省农业科学院(中国农业科技东北创新中心),吉林 长春 130033东北农业大学 农学院/教育部大豆生物学重点实验室,黑龙江 哈尔滨 150030
大豆百粒重FBL表达模式单倍型分析GmFBL24
soybean100-seed weightFBLexpression patternhaplotype analysisGmFBL24
《大豆科学》 2026 (4)
35-45,11
吉林省自然科学基金面上项目(20230101256JC)黑龙江省农作物重大品种推广补助项目国家自然科学基金面上项目(32272072).
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