调控铁死亡防治心肌缺血再灌注损伤的关键基因及潜在中药化合物筛选OA
Analysis and Validation of Key Genes and Potential Herbal Compounds Regulating Ferroptosis Against Myocardial Ischemia-Reperfusion Injury Based on Network Pharmacology
目的 基于网络药理学、分子对接技术及体外细胞实验筛选调控铁死亡防治心肌缺血再灌注损伤(MIRI)的关键基因及潜在中药化合物.方法 (1)通过FerrDb V2 数据库下载铁死亡相关基因,通过GeneCards和OMIM数据库获取MIRI疾病相关靶点,取二者的交集,获得调控铁死亡改善MIRI的潜在作用靶点.将上述交集基因导入STRING平台构建潜在作用靶点蛋白互作(PPI)网络,并筛选核心靶点.通过HERB数据库逆向筛选调控铁死亡防治MIRI的潜在中药化合物,利用 Cytoscape 3.9.1 软件建立靶点-化合物网络,筛选核心化合物.采用 AutoDock 软件对核心靶点与核心化合物开展分子对接模拟实验,筛选潜在有效化合物.(2)采用缺氧/复氧(H/R)诱导损伤HL-1 心肌细胞,以不同浓度(0.25、0.5、1.0 μmol·L-1)雷公藤红素、不同浓度(0.25、0.5、1.0 μmol·L-1)薯蓣皂苷及不同浓度(20、40、80 μmol·L-1)熊果酸进行干预,缺氧 6 h,复氧 2 h后进行相关指标的检测.采用CCK-8 法检测细胞活力;ELISA法检测细胞培养上清液中的乳酸脱氢酶(LDH)含量;活细胞成像系统检测细胞活性氧(ROS)含量、线粒体膜电位(∆Ψm);免疫荧光染色法检测细胞谷胱甘肽过氧化物酶 4(GPX4)、转铁蛋白(TF)的表达水平.结果 (1)共获得 128 个共同靶点即调控铁死亡改善MIRI的潜在作用靶点,核心靶点包括TP53、IL6、HIF1A、IL1B、STAT3、ALB、JUN、mTOR、PTEN、SRC.通过HERB数据库逆向筛选调控铁死亡防治MIRI的潜在中药化合物 470 个,核心化合物包括白藜芦醇、姜黄素、薯蓣皂苷、熊果酸、和厚朴酚、雷公藤红素.熊果酸、雷公藤红素、醉茄素A、雷公藤甲素、薯蓣皂苷与核心靶点普遍存在稳定结合.根据分子对接的结果,选择分子对接活性高的 3 个中药化合物雷公藤红素、薯蓣皂苷和熊果酸进行体外实验验证.(2)与正常组比较,模型组HL-1 心肌细胞活性显著降低(P<0.01);LDH漏出量显著升高(P<0.01);细胞ROS水平显著升高(P<0.01),ΔΨm 显著降低(P<0.01);细胞GPX4 蛋白表达显著下调(P<0.01),TF蛋白表达显著上调(P<0.01).与模型组比较,0.25 μmol·L-1雷公藤红素、0.25~1.0 μmol·L-1 薯蓣皂苷、80 μmol·L-1 熊果酸组的HL-1 心肌细胞活性显著升高(P<0.05,P<0.01);0.25~1.0 μmol·L-1 薯蓣皂苷组HL-1 心肌细胞LDH漏出量显著降低(P<0.05,P<0.01);1.0 μmol·L-1 薯蓣皂苷组HL-1 心肌细胞ROS水平显著降低(P<0.01),ΔΨm显著升高(P<0.01),GPX4 蛋白表达显著上调(P<0.01),TF蛋白表达显著下调(P<0.01).结论 雷公藤红素、薯蓣皂苷和熊果酸等可作为调控铁死亡防治MIRI的潜在中药化合物.薯蓣皂苷通过调控铁死亡相关蛋白GPX4 及TF表达、减轻氧化应激与线粒体损伤、抑制铁死亡,从而有效改善H/R诱导的HL-1 心肌细胞损伤.
Objective To screen key genes and potential herbal compounds regulating ferroptosis for the prevention and treatment of myocardial ischemia-reperfusion injury(MIRI)based on network pharmacology,molecular docking technology,and in vitro cellular experiments.Methods(1)Ferroptosis-related genes were downloaded from the FerrDb V2 database,and MIRI-related targets were obtained from the GeneCards and OMIM databases.The intersection of these gene sets was taken to identify potential targets regulating ferroptosis for ameliorating MIRI.The intersecting genes were imported into the STRING platform to construct a protein-protein interaction(PPI)network of potential targets and screen core targets.The HERB database was used for reverse screening of potential herbal compounds regulating ferroptosis for MIRI prevention and treatment.A target-compound network was established using Cytoscape 3.9.1 software to screen core compounds.Molecular docking simulations between core targets and core compounds were performed using AutoDock software to identify potential effective compounds.(2)HL-1 cardiomyocytes were injured by hypoxia/reoxygenation(H/R).Cells were treated with different concentrations of celastrol(0.25,0.5,1.0 μmol·L-1),different concentrations of dioscin(0.25,0.5,1.0 μmol·L-1),and different concentrations of ursolic acid(20,40,80 μmol·L-1).After 6 hours of hypoxia and 2 hours of reoxygenation,relevant indicators were assessed.Cell viability was detected using the CCK-8 method.Lactate dehydrogenase(LDH)content in the cell culture supernatant was measured by ELISA.Reactive oxygen species(ROS)content and mitochondrial membrane potential(∆Ψm)were detected using a live-cell imaging system.The expression levels of glutathione peroxidase 4(GPX4)and transferrin(TF)were detected by immunofluorescence staining.Results(1)A total of 128 common targets were identified as potential targets regulating ferroptosis for ameliorating MIRI.Core targets included TP53,IL6,HIF1A,IL1B,STAT3,ALB,JUN,mTOR,PTEN,and SRC.Through reverse screening using the HERB database,470 potential herbal compounds regulating ferroptosis for MIRI prevention and treatment were identified.Core compounds included resveratrol,curcumin,dioscin,ursolic acid,honokiol,and celastrol.Ursolic acid,celastrol,withaferin A,triptolide,and dioscin showed stable binding to the core targets.Based on the molecular docking results,three herbal compounds with high docking activity—celastrol,dioscin,and ursolic acid—were selected for in vitro experimental validation.(2)Compared with the normal group,the model group showed significantly decreased viability of HL-1 cardiomyocytes(P<0.01),significantly increased LDH leakage(P<0.01),significantly increased cellular ROS level(P<0.01),significantly decreased ΔΨm(P<0.01),significantly downregulated GPX4 protein expression(P<0.01),and significantly upregulated TF protein expression(P<0.01).Compared with the model group,the 0.25 μmol·L-1 celastrol group,the 0.25-1.0 μmol·L-1 dioscin groups,and the 80 μmol·L-1 ursolic acid group showed significantly increased viability of HL-1 cardiomyocytes(P<0.05,P<0.01);the 0.25-1.0 μmol·L-1 dioscin groups showed significantly decreased LDH leakage(P<0.05,P<0.01);the 1.0 μmol·L-1 dioscin group showed significantly decreased ROS level(P<0.01),significantly increased ΔΨm(P<0.01),significantly upregulated GPX4 protein expression(P<0.01),and significantly downregulated TF protein expression(P<0.01).Conclusion Celastrol,dioscin,and ursolic acid may serve as potential herbal compounds regulating ferroptosis for the prevention and treatment of MIRI.Dioscin ameliorates H/R-induced injury in HL-1 cardiomyocytes by regulating the expression of ferroptosis-related proteins GPX4 and TF,alleviating oxidative stress and mitochondrial damage,and inhibiting ferroptosis.
陈原原;郭浩;付建华;张会雨;郭帆;刘子馨;高佳明;曹策;胥淑娟;李兰兰;张晓晴
中国中医科学院西苑医院基础医学研究所,北京 100091中国中医科学院西苑医院安全性实验室,北京 100091中国中医科学院西苑医院基础医学研究所,北京 100091中国中医科学院西苑医院基础医学研究所,北京 100091中国中医科学院西苑医院基础医学研究所,北京 100091中国中医科学院西苑医院基础医学研究所,北京 100091中国中医科学院西苑医院基础医学研究所,北京 100091中国中医科学院西苑医院基础医学研究所,北京 100091中国中医科学院西苑医院基础医学研究所,北京 100091中国中医科学院西苑医院基础医学研究所,北京 100091中国中医科学院西苑医院基础医学研究所,北京 100091
医药卫生
心肌缺血再灌注损伤铁死亡网络药理学薯蓣皂苷雷公藤红素熊果酸氧化应激HL-1心肌细胞
myocardial ischemia-reperfusion injuryferroptosisnetwork pharmacologydioscincelastrolursolic acidoxidative stressHL-1 cardiomyocytes
《中药新药与临床药理》 2026 (6)
1100-1109,10
国家自然科学基金项目(82174219)中国中医科学院科技创新工程项目(CI2023C043YLL)国家中医药管理局中医药重点学科建设项目(zyyzdxk-2023231).
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