30个马铃薯品种StNRT2.5表达模式与生物信息学分析OA
Expression Patterns and Bioinformatics Analysis of StNRT2.5 in 30 Potato Varieties
高亲和转运蛋白NRT2 家族在氮匮乏条件下对作物氮吸收及再分配中发挥重要作用.以 30个不同马铃薯品种为材料,通过实时荧光定量 PCR(qRT-PCR)分析了 StNRT2.5的表达模式,并结合生物信息学对其保守结构域、启动子元件及系统发育关系进行了综合分析,为了进一步验证 StNRT2.5的功能,通过 STRING 数据库对其进行了蛋白互作预测及互作蛋白的表达模式分析.结果表明,StNRT2.5在不同马铃薯品种的不同部位中的表达水平存在显著差异,且 StNRT2.5 具有典型的硝酸盐转运蛋白家族保守结构域,启动子元件分析表明,StNRT2.5启动子区域包括与光响应相关的顺式作用元件、与激素响应相关的顺式作用元件、启动子和增强子元件等多种作用元件,且 StNRT2.5与原始栽培的二倍体马铃薯和多疣茄具有较高同源性.表达模式分析显示互作蛋白 StNR在叶片中表达上调,而 StNRT3.1则主要在根系中表达.
The NRT2 family of high-affinity nitrate transporters plays a crucial role in nitrogen uptake and redistribution under nitrogen-deficient conditions.In this study,30 different potato varieties were analyzed to investigate the expression patterns of StNRT2.5 using quantitative real-time PCR(qRT-PCR),and bioinformatics analysis of its conserved domains,promoter elements,and phylogenetic relationships.To further verify the function of StNRT2.5,protein-protein interaction prediction and the expression analysis of interacting proteins were conducted using the STRING database.The results showed significant variation in StNRT2.5 expression among different potato varieties and tissues.StNRT2.5 contains conserved domains characteristic of nitrate transporter family proteins.Promoter analysis revealed the presence of multiple cis-acting elements,including light-responsive elements,hormone-responsive elements,as well as promoter and enhancer elements.Phylogenetic analysis indicated high homology between StNRT2.5 and primitive cultivated diploid potato and Solanum verrucosum.Expression analysis of interacting proteins showed that StNR was upregulated in leaves,while StNRT3.1 was predominantly expressed in roots.
王辰宇;江政廷;乔宏宇;赵桐;刘慧羚;张婧颖;韩玉珠
吉林农业大学园艺学院/东北亚特色种质资源保育创新中心,130118,吉林长春吉林农业大学园艺学院/东北亚特色种质资源保育创新中心,130118,吉林长春吉林农业大学园艺学院/东北亚特色种质资源保育创新中心,130118,吉林长春吉林农业大学园艺学院/东北亚特色种质资源保育创新中心,130118,吉林长春吉林农业大学园艺学院/东北亚特色种质资源保育创新中心,130118,吉林长春吉林农业大学园艺学院/东北亚特色种质资源保育创新中心,130118,吉林长春吉林农业科技学院农学院,132101,吉林吉林
马铃薯StNRT2.5表达模式生物信息学分析蛋白互作
PotatoStNRT2.5Expression patternBioinformatics analysisProtein-protein interaction
《作物杂志》 2026 (3)
163-170,8
吉林农业大学优博计划
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