毛竹EIN3/EIL基因家族的鉴定及表达模式分析OA
Identification and Expression Analysis of EIN3/EIL Gene Family in Phyllostachys edulis
[目的]EIN3/EIL基因家族在植物乙烯信号转导、生长发育及生物与非生物胁迫响应中发挥关键作用,而毛竹(Phyllo-stachys edulis)中该基因家族的系统特征与功能尚未明确.旨在通过全基因组鉴定、进化分析及表达谱检测,系统揭示毛竹EIN3/EIL基因家族的分子特征、进化规律及胁迫响应模式,为其功能验证和毛竹抗逆遗传改良提供理论依据.[方法]采用整合性的生物信息学流程,从全基因组层面鉴定毛竹EIN3/EIL基因家族,并对其结构、进化及表达模式进行深入分析.[结果]毛竹基因组中鉴定出14个EIN3/EIL基因,不均匀分布于13条染色体.系统发育分析显示,该家族分为3个亚家族,与水稻(Oryza sativa)、玉米(Zea mays)同源基因亲缘关系更近,与拟南芥(Arabidopsis thaliana)更远;种间共线性分析鉴定出毛竹与水稻19对同源基因,协方差显著高于拟南芥.基因结构含1~9个内含子,保守基序分布具有亚家族特异性,蛋白均含EIN3、EIN3 superfamily和PLN03109结构域.启动子区域富含植物激素响应元件和光反应元件,部分含低温、盐胁迫响应元件.14对同源基因Ka/Ks比值均小于1,受纯化选择压力.表达分析表明,PeEIL08、PeEIL09、PeEIL12在盐、干旱胁迫下显著上调,PeEIL09在多种处理中维持高表达,呈现广谱胁迫响应特征.[结论]毛竹EIN3/EIL基因家族进化保守且功能分化,其成员通过启动子顺式元件调控,在非生物胁迫响应中发挥重要作用.PeEIL08、PeEIL09、PeEIL12等核心基因可作为毛竹抗逆育种的潜在分子靶标,为深入解析该家族基因功能及乙烯信号通路在毛竹胁迫适应中的调控机制提供重要参考.
[Objective]The EIN3/EIL(ethylene-insensitive 3/ethylene-insensitive 3-like)gene family plays critical roles in ethylene signal transduction,plant growth and development,and responses to biotic and abiotic stresses.However,the systematic characterization and functions of this gene family in moso bamboo(Phyllostachys edulis)remain poorly understood.This study aims to systematically investigate the molecular characteristics,evolutionary patterns,and stress response profiles of the EIN3/EIL gene family in moso bamboo through genome-wide identification,evolutionary analysis,and expression profiling,thereby providing a theoretical basis for functional validation and stress resistance breeding in this species.[Methods]An integrated bioinformatics workflow was applied to identify the EIN3/EIL gene family at the whole-genome level in moso bamboo.Comprehensive analyses of gene structure,evolutionary characteristics,and expression patterns were subsequently performed.[Results]A total of 14 EIN3/EIL genes were identified in the moso bamboo genome,unevenly distributed across 13 chromosomes.Phylogenetic analysis classified these genes into three distinct subfamilies,showing closer evolutionary relationships with homologs from rice(Oryza sativa)and maize(Zea mays)than from Arabidopsis(Arabidopsis thaliana).Interspecies collinearity analysis identified 19 homologous gene pairs between moso bamboo and rice,with significantly higher covariance compared to Arabidopsis.The gene structures contained 1 to 9 introns,and the distribution of conserved motifs exhibited subfamily-specific patterns.All encoded proteins contained EIN3,EIN3 superfamily,and PLN03109 domains.Promoter regions were enriched with hormone-responsive elements and light-responsive elements,with some also harboring low-temperature and salt-stress responsive elements.The Ka/Ks ratios for 14 homologous gene pairs were all less than 1,indicating that they were subjected to purifying selection pressure.Expression analysis revealed that PeEIL08,PeEIL09,and PeEIL12 were significantly upregulated under salt and drought stress conditions.Notably,PeEIL09 maintained high expression across multiple treatments,suggesting a broad-spectrum stress-responsive role.[Conclusion]The EIN3/EIL gene family in moso bamboo is evolutionarily conserved yet functionally differentiated.Its members are likely regulated by promoter cis-elements and play important roles in abiotic stress responses.Core genes such as PeEIL08,PeEIL09,and PeEIL12 represent potential molecular targets for enhancing stress resistance in moso bamboo breeding.This study provides important insights for further functional characterization of this gene family and for understanding the regulatory mechanisms of the ethylene signaling pathway in stress adaptation of moso bamboo.
余璐;鲁亚萍
浙江农林大学 竹子研究院,杭州 311300云南林业职业技术学院 林业学院,昆明 650224
农业科技
毛竹EIN3/EIL基因家族表达分析
Phyllostachys edulisEIN3/EIL familyexpression analysis
《沈阳农业大学学报》 2026 (3)
65-77,13
云南林业职业技术学院校级项目(KY[QN]202319,XS[KC]202525)浙江省自然科学基金重点项目(LZ24C160002)国家自然科学基金项目(32471980)
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