基于多组学孟德尔随机化和生物信息学方法探讨雷丸治疗癫痫内在机制OA
Exploring the intrinsic mechanisms of Omphalia lapidescens sclerotium in treating epilepsy based on multi-omics Mendelian randomization and bioinformatics methods
癫痫作为一种复杂的慢性神经系统疾病,现有药物存在治疗抵抗性等局限.雷丸(石化脐菇Omphalia lapidescens的菌核)作为传统菌类药,具有一定的抗癫痫功效,但其机制尚未阐明.本研究旨在通过整合网络药理学、多组学孟德尔随机化(MR)及多种生物信息学方法系统揭示雷丸治疗癫痫作用机制.通过 TCMSP 数据库筛选雷丸活性成分,并预测其作用靶点;随后联合基于eQTL/pQTL 数据的 MR 分析、基于微阵列数据集的差异基因表达分析和机器学习模型,获取雷丸治疗癫痫的关键靶点,通过拓扑分析获取核心靶点.最后运用 GO/KEGG 富集分析、基因富集分析、免疫浸润评估、分子对接及肠道菌群 MR解析其作用途径.最后鉴定出雷丸 3种活性成分谷甾醇、豆甾醇、过氧化麦角甾醇,及其 87 个潜在靶点,将其与不同方法获得的癫痫靶点交集,筛选出7 个雷丸治疗癫痫的关键靶点为 RORC、S1PR3、ADORA1、PTGS2、RORA、CDC25B、TBXAS1,其中 PTGS2 和 RORA 为核心靶点.分子对接显示活性成分与核心靶点结合能均<-11.0 kcal/mol,表明强结合活性.富集分析揭示靶点主要调控脂质代谢、昼夜节律、炎症反应及鞘脂信号通路;免疫浸润表明 RORA 激活 CD8+T 细胞并抑制促炎细胞,PTGS2 调控树突状细胞活化.肠道菌群 MR 分析发现 PTGS2、RORA 与双歧杆菌属等 17 种菌群存在因果关联,提示雷丸可能调节"肠-脑轴"参与抗癫痫作用.本研究发现雷丸通过多靶点、多通路协同调控免疫炎症、脂代谢稳态、昼夜节律及肠-脑交互作用发挥抗癫痫效应.研究克服传统网络药理学局限性,为雷丸临床转化及癫痫治疗策略优化提供参考.
Epilepsy is a complex chronic neurological disorder,existing antiepileptic drug face limitations such as treatment resistance.Omphalia lapidescens sclerotium(lei wan,omphalia),a traditional fungal medicine,has demonstrated certain anticonvulsant effects,but its mechanisms remain unclear.This study aims at systematically elucidating the mechanism of omphalia in treating epilepsy through integrating network pharmacology,multi-omics Mendelian randomization(MR),and various bioinformatic approaches.Active ingredients of omphalia were screened using the TCMSP database,and their potential therapeutic targets were predicted.By combining MR analysis based on eQTL/pQTL data,differential gene expression analysis from microarray datasets and machine learning models,key targets for omphalia in epilepsy treatment were identified,and core targets were selected through topological analysis.Subsequently,GO/KEGG enrichment analysis,gene set enrichment analysis,immune infiltration assessment,molecular docking,and gut microbiota MR were applied to explore the functional mechanisms of omphalia.Three active ingredients,sitosterol,stigmasterol,and ergosterol peroxide,along with 87 potential targets were identified.Intersection with epilepsy-related targets obtained through various methods yielded seven key targets:RORC,S1PR3,ADORA1,PTGS2,RORA,CDC25B,and TBXAS1,among which PTGS2 and RORA were identified as core targets.Molecular docking showed binding energies below-11.0 kcal/mol for all active ingredients with core targets,indicating strong binding affinity.Enrichment analysis revealed that these targets are primarily involved in regulating lipid metabolism,circadian rhythm,inflammatory response,and sphingolipid signaling pathways.Immune infiltration analysis suggests that RORA activates CD8+T cells and inhibits pro-inflammatory cells,while PTGS2 regulates dendritic cell activation.MR analysis of gut microbiota indicated causal associations between PTGS2/RORA and 17 microbial taxa including Bifidobacterium,suggesting omphalia might exert antiepileptic effects by modulating the gut-brain axis.This study reveals that omphalia exerts anticonvulsant effects through multi-target and multi-pathway synergistic regulation of immune inflammation,lipid metabolic homeostasis,circadian rhythm,and gut-brain interaction.The research overcomes the limitations of traditional network pharmacology and provides a reference for the clinical translation of omphalia and optimization of epilepsy treatment strategies.
胡东森;王红岩;孙文奇;孟黄晴;陈高铭;王维广;翟双庆
北京中医药大学,北京 100029北京中医药大学,北京 100029||北京中医药大学第三附属医院,北京 100029北京中医药大学,北京 100029北京中医药大学,北京 100029北京中医药大学,北京 100029北京中医药大学,北京 100029北京中医药大学,北京 100029
雷丸癫痫生物信息学孟德尔随机化治疗靶点与机制
Omphalia lapidescensepilepsybioinformaticsMendelian randomizationtherapeutic target and mechanism
《菌物学报》 2026 (6)
210-228,19
国家重点研发计划(2018YFC1704100)国家自然科学基金(81873396)国家中医药管理局高水平中医药重点学科建设项目(zyyzdxk-2023252) This work was supported by the National Key Research and Development Program of China(2018YFC1704100),the National Natural Science Foundation of China(81873396),and the National Administration of Traditional Chinese Medicine High-Level Traditional Chinese Medicine Key Discipline Construction Project(zyyzdxk-2023252).
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