县域尺度下不同类型土壤细菌群落分析及溯源研究OA
Analysis and Source Tracing of Bacterial Communities in Different Soil Types at the County Scale
本文将采集到的广灵县328个土壤样本按照生境类型分为菜地土壤、湿地土壤、公园土壤、道路旁土壤、丘陵土壤等5种类型,探究县域范围下不同土壤利用类型细菌群落多样性分布特点以及未知来源土壤地理溯源方法.通过Illumina Miseq PE250平台进行高通量测序,利用Qiime 2流程分析微生物组16S rRNA基因扩增子测序数据.同时测定14项土壤理化指标.土壤细菌群落结构分析结果证实,不同生境下优势菌群相对丰度存在差异.主坐标分析(principal coordinates analysis,PCoA)结果显示,相同分组的土壤样本点组内差异较小,不同分组的土壤类型样本点组间差异较大,彼此之间有一定的差异.在此分类下发现土壤pH值、总氮、含水量、无机碳、全磷、铝、锰、铅是驱动区域内土壤微生物群落组成变化的重要环境因子.最后建立随机森林模型,优化模型参数,利用采集样本作为训练集,发现使用土壤微生物数据时模型预测准确率最高,准确率可达83.58%.
A total of 328 soil samples were collected from Guangling County and classified into habitat-based categories,including vegetable soil,wetland soil,park soil,roadside soil,and hilly soil.The study aimed to investigate the distribution characteristics of bacterial community diversity across different land-use types at the county scale,as well as the geographic traceability of soil of unknown origin.High-throughput sequencing was conducted using the Illumina MiSeq PE250 platform,and the microbiome 16S rRNA gene amplicon sequencing data were analyzed using the Qiime 2 pipeline.Additionally,physicochemical indicators of 14 soil samples were determined.The soil bacterial community structure profiling demonstrated that,the relative abundance of dominant bacterial groups varied across different habitats.Principal coordinate analysis(PCoA)results indicated that intra-group differences among soil sample sites within the same subgroups were small,while inter-group differences among soil type sample sites from different subgroups were significant.Under this categorization,pH,TN,WC,IC,TP,Al,Mn,and Pb were identified as important environmental factors driving changes in soil microbial community composition in the region.Finally,a random forest model was established,and its parameters were optimized.Using the collected samples as a training set,the model achieved the highest prediction accuracy when utilizing soil microbial data,with an accuracy of 83.58%.
俞皓麒;苑美青;贾振军;时玉;石晓玉;刘光尧;林百川;柳佳彤;李卓言;陈博旭;凃政
金华市公安局江南分局,浙江金华 321000公安部鉴定中心,法医遗传学公安部重点实验室,北京 100038中国人民公安大学,北京 100038河南大学生命科学学院,河南开封 475004河南大学生命科学学院,河南开封 475004公安部鉴定中心,法医遗传学公安部重点实验室,北京 100038公安部鉴定中心,法医遗传学公安部重点实验室,北京 100038中国人民公安大学,北京 100038中国人民公安大学,北京 100038中国人民公安大学,北京 100038公安部鉴定中心,法医遗传学公安部重点实验室,北京 100038
社会科学
土壤物证高通量测序技术随机森林模型土壤细菌群落土壤利用类型
soil forensichigh-throughput sequencing technologyrandom forest modelsoil bacterial communitiessoil utilization types
《刑事技术》 2026 (3)
252-259,8
中央级公益性科研院所基本科研业务费专项资金项目(2021JB003)中国人民公安大学基本科研业务费项目(2024JKF05)
评论