紫色玉米花色苷合成过程中相关基因家族鉴定及结构方程模型分析OA
Identification and structural equation modeling of gene families involved in synthesis of purple maize anthocyanins
[目的]探究紫色玉米花色苷的合成过程中代谢通路与多基因调控网络的复杂关系.[方法]通过整合基因组学与转录组学分析,并构建花色苷合成过程中基因家族之间的结构方程模型(PLS-SEM),对花色苷合成过程中基因家族间相互作用关系进行探讨.[结果]系统鉴定出紫色玉米中30个与花色苷合成相关的基因家族,含1840个序列.基因家族表达分析显示,结构基因DFR在所有样本中维持高表达,是花色苷合成的关键限速酶,而F3'H和ANS在样本中维持低水平表达;转录因子MYB、BHLH和WD40在所有样本中高表达.蛋白互作网络分析表明,GST、F3H、DFR、CHS、4CL和BHLH等蛋白具有较高的介数中心性,处于调控网络的核心位置,并根据参与花色苷合成途径将30个基因家族分为7个基因集,构建结构方程模型表明糖转运对花色苷骨架合成和转运具有正向效应,对降解具有负向效应;铁离子相关基因和结构修饰基因同样促进合成、抑制降解.[结论]本研究通过网络识别出GST、F3H、DFR、CHS、BHLH等基因处于互作网络核心,并通过PLS-SEM应用于花色苷代谢网络表明花色苷积累是碳代谢与次级代谢动态平衡的结果.本研究为解析花色苷合成代谢相关基因家族提供了新视角,并为分子育种改良高花色苷玉米品种提供新靶点.
[Objective]The paper aimed to investigate the complex relationship between metabolic pathways and multi-gene regulatory net-works during the synthesis of purple maize anthocyanins.[Method]The study explored the interactions between gene families during anthocy-anin synthesis by integrating genomics and transcriptomics analysis and constructing a structural equation model between gene families during anthocyanin synthesis.[Result]A total of 30 gene families associated with anthocyanin biosynthesis in purple maize were systematically iden-tified,encompassing 1840 coding sequences.Gene family expression profiling demonstrated that the structural gene DFR exhibited sustained high expression across all samples and functioned as a key rate-limiting enzyme in anthocyanin biosynthesis,whereas F3'H and ANS main-tained consistently low expression levels.Transcription factors MYB,BHLH and WD40 were highly expressed in all samples,indicating their fundamental roles in the regulatory network.Protein-protein interaction(PPI)network analysis further revealed that proteins including GST,F3H,DFR,CHS,4CL and BHLH possessed high betweenness centrality,occupying hub positions in the regulatory network.Based on the functional roles of the 30 gene families in the anthocyanin biosynthesis pathway,they were categorized into 7 functional gene sets,and a par-tial least squares structural equation model(PLS-SEM)was constructed accordingly.The model results indicated that sugar transport exerted a significant positive effect on both anthocyanin skeleton synthesis and vacuolar transport,while exerting a negative regulatory effect on antho-cyanin degradation.Additionally,iron homeostasis-related genes and structural modification-related genes synergistically promoted anthocyanin accumulation and inhibited its catabolism.[Conclusion]Bioinformatics analysis identifies core genes within the interaction network,including GST,F3H,DFR,CHS and BHLH.The application of Partial Least Squares Structural Equation Modeling(PLS-SEM)to the anthocyanin metabolic network demonstrates that anthocyanin accumulation results from a dynamic balance between carbon metabolism and secondary me-tabolism.These findings provide novel perspectives for elucidating the interactions among gene families involved in anthocyanin synthesis and metabolism,as well as new targets for molecular breeding to develop maize varieties with high anthocyanin content.
周世永;夏攀;杨良;王悦榕;杨梦;华燕
西南林业大学生物与食品工程学院/云南省高校大健康类森林资源开发利用工程研究中心,昆明 650224楚雄师范学院农学院,云南楚雄 675000曲靖市种子管理站,云南曲靖 655099西南林业大学生物与食品工程学院/云南省高校大健康类森林资源开发利用工程研究中心,昆明 650224西南林业大学生物与食品工程学院/云南省高校大健康类森林资源开发利用工程研究中心,昆明 650224西南林业大学生物与食品工程学院/云南省高校大健康类森林资源开发利用工程研究中心,昆明 650224
农业科技
花色苷结构方程模型紫色玉米基因家族
AnthocyaninStructural equation modelingPurple maizeGene family
《西南农业学报》 2026 (5)
937-946,10
西南林业大学基金项目(110225029)
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