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阿尔茨海默病失巢凋亡相关基因挖掘与验证OA

Mining and verification of anoikis-related genes in Alzheimer's disease

中文摘要英文摘要

目的 基于机器学习算法筛选阿尔茨海默病(Al-zheimer's disease,AD)中失巢凋亡相关基因的表达特征,并评估其诊断价值.方法 以GEO数据集GSE44770为训练集,筛选失巢凋亡相关差异表达基因(DEGs).采用共识聚类将AD患者分为C1/C2亚型.通过加权基因共表达网络分析(WGCNA)筛选AD相关特征基因,并运用随机森林、支持向量机、极限梯度提升和广义线性模型构建诊断模型,确定最优模型后提取与AD临床性状最相关的关键基因.将临床性状关键基因与失巢凋亡DEGs进行相关性分析,筛选出失巢凋亡的关键DEGs.使用APP/PSI转基因AD模型小鼠,通过HE染色、Western blot和RT-qPCR对关键基因进行实验验证.结果 共鉴定出20个失巢凋亡相关DEGs.AD患者可分为C1/C2亚型,其中C2亚型表现出糖酵解增强、炎症激活及线粒体功能抑制等特征.WGCNA筛选出243个AD相关基因,极限梯度提升模型性能最优,从中确定OLFM1、ITPKB等5个与临床性状相关的关键基因.对临床性状相关的关键基因与失巢凋亡 DEGs 进行系统关联分析,最终筛出U C H L 1、T N F R S F 1 0 B和ITGB5为失巢凋亡的关键DEGs.动物实验提示,AD模型小鼠海马神经元损伤明显,p-Tau蛋白异常积累,失巢凋亡的关键DEGs表达趋势与生信预测一致.结论 失巢凋亡在AD发生中具有重要作用,其关键基因可作为潜在诊断标志物和治疗靶点.

Aim To identify the expression character-istics of anoikis-related genes in Alzheimer's disease(AD)using machine learning algorithms and evaluate their diagnostic value.Methods The GEO dataset GSE44770 was used as the training set to screen for anoikis-related differentially expressed genes(DEGs).Consensus clustering was applied to classify AD patients into C1 and C2 subtypes.Weighted gene co-expression network analysis(WGCNA)was em-ployed to identify AD-related feature genes.Diagnos-tic models were constructed using Random Forest,Support Vector Machine,eXtreme Gradient Boosting(XGBoost),and Generalized Linear Model.The opti-mal model was selected,and key genes most corre-lated with AD clinical traits were extracted.Correla-tion analysis between these key genes and anoikis-related DEGs was conducted to identify crucial anoikis-related DEGs.Experimental validation was performed using APP/PSI transgenic AD model mice through HE staining,Western blot,and RT-qPCR.Results A total of 20 anoikis-related DEGs were identified.AD patients were classified into C1 and C2 subtypes,with the C2 subtype exhibiting enhanced glycolysis,acti-vated inflammation,and suppressed mitochondrial function.WGCNA identified 243 AD-related genes.The XGBoost model demonstrated the best perfor-mance,and five key genes(including OLFM1 and ITPKB)significantly associated with clinical traits were identified.Systematic correlation analysis be-tween these key genes and anoikis-related DEGs ulti-mately screened UCHL1,TNFRSF10B,and ITGB5 as crucial anoikis-related DEGs.Animal experiments re-vealed significant hippocampal neuronal damage,ab-normal p-Tau protein accumulation,and consistent ex-pression trends of the key anoikis-related DEGs with bioinformatic predictions.Conclusion Anoikis plays an important role in the pathogenesis of AD,and its key genes may serve as potential diagnostic biomarkers and therapeutic targets.

黄颖睿;吴林;朱小敏;符钰岚;张颖;卓桂锋;郝二伟;陈炜

广西中医药大学第一临床医学院,广西 南宁 530022||广西中医药大学研究生院,广西 南宁 530200广西中医药大学研究生院,广西 南宁 530200广西中医药大学第一临床医学院,广西 南宁 530022广西中医药大学第一临床医学院,广西 南宁 530022广西中医药大学第一临床医学院,广西 南宁 530022广西中医药大学第一临床医学院,广西 南宁 530022广西中医药大学广西中药药效研究重点实验室,广西 南宁 530200广西中医药大学第一附属医院,广西 南宁 530022

医药卫生

阿尔茨海默病失巢凋亡生物信息学机器学习实验验证差异基因

Alzheimer's diseaseanoikisbioinfor-maticsmachine learningexperimental validationdifferentially expressed genes

《中国药理学通报》 2026 (5)

930-937,8

国家自然科学基金资助项目(No 82460906,82060844)广西中医药大学"岐黄工程"高层次人才团队(No 202410)广西中医脑病临床研究中心(桂科AD20238028)国家中医药管理局高水平重点学科-中医内科学(No ZYYZDXK-2023166)广西中医药重点学科建设项目(No GZXK-Z-20-13)

10.12360/CPB202506028

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