一株拮抗钟器疫腐霉的类芽孢杆菌SEC-488的筛选、鉴定与全基因组分析OA
Identification and Whole-Genome Analysis of an Antagonistic Paenibacillus Strain SEC-488 against Phytopythium vexans
由钟器疫腐霉(Phytopythium vexans)引起的根褐腐病是影响苎麻产量和品质的重要因素.为筛选具有拮抗钟器疫腐霉潜力的生防微生物资源,从苎麻根际土样中分离获得一株拮抗菌株 SEC-488,并采用平板对峙培养法对其拮抗性能进行评价,结合显微镜与扫描电镜观察、生防相关功能特性测定、全基因组测序与生物信息学分析,对该菌株的生防潜力进行解析.结果表明,SEC-488 在离体条件下能够显著抑制钟器疫腐霉菌落生长,其抑制率为(76.10±0.65)%.显微镜观察显示,SEC-488 作用下钟器疫腐霉菌丝形态和超微结构发生明显改变.功能分析表明,SEC-488 具有蛋白酶和淀粉酶活性,并具备溶磷、解钾、固氮和产铁载体等生防相关表型.基于形态学、生理生化特性、16S rDNA 系统发育分析及全基因组 ANI 和 isDDH 比对结果,SEC-488 被鉴定为类芽孢杆菌属(Paenibacillus)菌株.全基因组注释结果显示,该菌株基因组中含有 310 个碳水化合物活性酶相关基因和 17 个次生代谢生物合成基因簇.该研究结果为苎麻根褐腐病生物防治相关研究提供了试验依据和理论参考.
Root brown rot caused by Phytopythium vexans is a major constraint on ramie yield and quality.To identify biocontrol microorganisms with antagonistic activity against P.vexans,we isolated an antagonistic bacterial strain,SEC-488,from ramie rhizosphere soil samples.Its antifungal activity was e-valuated using a dual-culture assay.Microscopic and scanning electron microscopy observations,biocon-trol-related functional assays,whole-genome sequencing,and bioinformatic analyses were conducted to assess its biocontrol potential.The results showed that SEC-488 significantly inhibited the mycelial growth of P.vexans in vitro,with an inhibition rate of(76.10±0.65)%.Microscopic observations revealed pronounced alterations in hyphal morphology and ultrastructure of the pathogen after exposure to SEC-488.Functional characterization indicated that SEC-488 exhibits protease and amylase activities and pos-sesses multiple biocontrol-related traits,including phosphate solubilization,potassium solubilization,ni-trogen fixation,and siderophore production.Based on morphological characteristics,physiological and bi-ochemical properties,16S rDNA gene phylogenetic analysis,and whole-genome average nucleotide iden-tity(ANI)and in silico DNA-DNA hybridization(isDDH)comparisons,SEC-488 was identified as a member of the genus Paenibacillus.Genome annotation revealed the presence of 310 carbohydrate-active enzyme-related genes and 17 biosynthetic gene clusters for secondary metabolite.These findings provide experimental evidence and a theoretical basis for the biocontrol of ramie root brown rot.
邢濮厚;秦菁菁;冯佳;王芳;宋志强;刘华;颜健红;王吐虹;程毅
中国农业科学院麻类研究所,湖南 长沙 410221中国农业科学院麻类研究所,湖南 长沙 410221河北北方学院,河北 张家口 075000中国农业科学院麻类研究所,湖南 长沙 410221中国农业科学院麻类研究所,湖南 长沙 410221慈利县农业农村局,湖南 张家界 427299娄底市农业农村局,湖南 娄底 417099中国农业科学院麻类研究所,湖南 长沙 410221中国农业科学院麻类研究所,湖南 长沙 410221
农业科技
苎麻钟器疫腐霉类芽孢杆菌拮抗活性全基因组分析生物防治
ramiePhytopythium vexansPaenibacillusantagonistic activitywhole-genome anal-ysisbiological control
《中国麻业科学》 2026 (2)
84-94,104,12
长沙市自然科学基金(kq2502058)湖南省自然科学基金青年基金(2021JJ40648)国家自然科学基金青年基金(32502588)湖南省自然科学基金区域联合基金(2025JJ70599)中国农业科学院创新工程(CAAS-IBFC-2025-01)
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