六倍体普通油茶SPX基因家族的鉴定与表达分析OA
Identification and expression analysis of SPX gene family in hexaploid Camellia oleifera
[目的]我国油茶主产区的酸性土壤普遍缺磷.SPX基因家族在植物磷信号调控中起关键作用,然而该家族在六倍体普通油茶中的成员组成、进化关系及表达模式尚不清晰.本研究对油茶SPX基因家族进行系统鉴定,解析其进化与表达特征,以期为油茶的磷高效育种提供理论依据.[方法]基于六倍体普通油茶"长林40号"基因组,通过生物信息学方法鉴定SPX基因家族成员,并分析其系统进化、蛋白特性与顺式作用元件;同时基于转录组数据与荧光定量PCR实验,明确该家族成员的组织表达特征.[结果]共鉴定出126个CoSPX基因,系统进化、蛋白结构分析均验证CoSPXs基因可分为4个亚家族(SPX,47个成员;SPX-RING,11个;SPX-EXS,41个;SPX-MFS,27个).较二倍体野生油茶的29个ClSPX基因显著扩张4.34倍,Ka/Ks分析(均值0.35±0.08)显示强纯化选择.理化性质预测表明,83.3%的CoSPX蛋白为不稳定亲水蛋白,79.4%(100/126)成员定位于膜/胞质(62膜+38胞质),且亚家族定位偏好显著:SPX-EXS亚家族蛋白97.6%(40/41)定位于膜,SPX-RING亚家族蛋白全部(11/11)定位于核.顺式元件分析显示SPX亚家族显著富集P1BS元件(89.4%成员含≥2个拷贝),其中CoSPX23和CoSPX20分别含10个和6个近端P1BS,与低磷胁迫下二者表达量极显著上调(30 d诱导倍数近140倍)相吻合.组织特性表达分析表明,SPX亚家族成员在叶片中显著高表达,而SPX-MFS亚家族96.3%成员在胚中特异性表达,进一步的qRT-PCR结果显示,SPX亚家族的CoSPX4与CoSPX18为叶片优势表达基因,而CoSPX19与CoSPX22为胚优势表达基因,其在胚中的表达丰度远超其他组织.[结论]与二倍体野生油茶相比,六倍体普通油茶SPX家族表现出显著的成员扩张,具有明显的功能分化特征,体现在启动子顺式调控元件的组成、分布及组织特异性表达模式的差异上,研究为油茶磷高效分子育种提供了关键基因资源和理论依据.
[Objective]Camellia oleifera in China is predominantly cultivated in acidic soils with prevalent phosphorus(P)deficiency.As core regulators of plant P signaling,the SPX gene family remains uncharacterized in hexaploid C.oleifera.The present study aimed to system-atically identify SPX family members and decipher their evolutionary and expression patterns,providing a theoretical foundation for P-efficient breeding.[Method]Based on the genomic sequence of hexaploid C.oleifera'Changlin 40',we performed genome-wide identification of SPX genes via bioinformatics approaches,followed by analyses of phylogenetic relationships,protein properties,cis-regulatory elements.Further-more,their tissue-specific expression profiles were determined using transcriptome sequencing and qRT-PCR.[Result]A total of 126 CoSPX genes were identified and classified into four subfamilies:SPX(47 members),SPX-RING(11),SPX-EXS(41)and SPX-MFS(27).The gene family exhibited 4.34-fold expansion compared to its diploid wild relative C.lanceoleosa(29 ClSPX genes),with strong purifying selec-tion(mean Ka/Ks=0.35±0.08).Physicochemical predictions revealed that 83.3%of CoSPX proteins were unstable hydrophilic mole-cules.Subcellular localization analysis showed that 79.4%(100/126)of members were localized to membranes/cytoplasm(62 membrane and 38 cytoplasmic),with significant subfamily localization preferences:97.6%(40/41)of SPX-EXS subfamily members localized to mem-branes,while all(11/11)SPX-RING subfamily members localized to nuclei.Cis-element analysis revealed that the SPX subfamily was sig-nificantly enriched in P1BS elements(89.4%of members contained ≥2 copies),with CoSPX23 and CoSPX20 harboring 10 and 6 proximal P1BS elements,respectively.This finding was consistent with their drastically up-regulated expression under low-Pi stress(nearly 140-fold in-duction after 30 days).Tissue-specific expression analysis revealed that SPX subfamily members were significantly highly expressed in leav-es,while 96.3%of SPX-MFS subfamily members were specifically expressed in embryos.Further qRT-PCR results clearly demonstrated that CoSPX4 and CoSPX18 from the SPX subfamily were leaf-preferential genes,whereas CoSPX19 and CoSPX22 were embryo-preferential genes,with their expression abundance in embryos far exceeding that in other tissues.[Conclusion]Compared to its diploid progenitor,the hexaploid C.oleifera genome exhibited extensive SPX family expansion coupled with functional diversification,reflected in subfamily-specific cis-element architectures and tissue expression biases.The study provides pivotal genetic resources and a theoretical framework for P-efficient breeding in C.oleifera.
杜红园;刘一鸣;汪涵;汤欣欣;程军勇;程计华;杜洋文;朱华国
黄冈师范学院生物与农业资源学院,湖北黄冈 438000||经济林木种质改良与资源综合利用湖北省重点实验室,湖北黄冈 438000黄冈师范学院生物与农业资源学院,湖北黄冈 438000黄冈师范学院生物与农业资源学院,湖北黄冈 438000黄冈师范学院生物与农业资源学院,湖北黄冈 438000||经济林木种质改良与资源综合利用湖北省重点实验室,湖北黄冈 438000经济林木种质改良与资源综合利用湖北省重点实验室,湖北黄冈 438000||湖北省林业科学研究院,武汉 430075经济林木种质改良与资源综合利用湖北省重点实验室,湖北黄冈 438000||湖北省林业科学研究院,武汉 430075经济林木种质改良与资源综合利用湖北省重点实验室,湖北黄冈 438000||湖北省林业科学研究院,武汉 430075黄冈师范学院生物与农业资源学院,湖北黄冈 438000||经济林木种质改良与资源综合利用湖北省重点实验室,湖北黄冈 438000
农业科技
六倍体普通油茶SPX基因家族生物信息学分析启动子表达模式
Hexaploid Camellia oleiferaSPX gene familyBioinformatics analysisPromoterExpression profile
《西南农业学报》 2026 (4)
736-749,14
湖北省高等学校优秀中青年科技创新团队(T2023025)湖北省自然科学基金联合基金项目(2025AFD333)湖北省重点研发计划项目(2025BBB010)
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