基于双硫死亡机制的肾纤维化治疗靶点与药物筛选OA
Screening of therapeutic targets and drugs for renal fibrosis based on disulfidptosis mechanism
目的 探究双硫死亡在肾纤维化中的作用机制,并基于疾病与表型的共同靶点,高通量筛选能够延缓肾纤维化进展的候选药物.方法 从GEO数据库和GeneCards平台获取肾纤维化相关基因,使用韦恩交集分析筛选肾纤维化与双硫死亡的共同作用靶点,构建PPI网络并开展京都基因与基因组百科全书(KEGG)通路富集分析和基因本体(GO)富集分析;利用Con-nectivity Map(CMap)数据库针对关键靶点进行高通量药物筛选,应用分子对接和分子动力学模拟评估候选药物与核心靶蛋白SLC7A11的结合特性及稳定性.结果 韦恩交集分析获得13个双硫死亡与肾纤维化共同靶点(GCLM、RPN1及SLC7A11等),CMap筛选得到氟尿苷、沙库巴曲、考比替尼3种药物.PPI网络分析确定了ACSL4、GCLM及HMGA2等共11个核心靶点.KEGG富集分析显示,13个共同靶点主要参与铁死亡及癌症相关信号通路的调控.铁死亡与双硫死亡在胱氨酸代谢、NADPH水平等方面密切相关,提示了双硫死亡在调控肾纤维化的潜在机制.分子对接与分子动力学模拟表明,沙库巴曲和考比替尼与核心靶点SLC7A11具有较强且稳定的结合力,可通过抑制SLC7A11表达调控双硫死亡,延缓肾纤维化进程.结论 双硫死亡相关基因与肾纤维化进程存在关联,SLC7A11可能是连接二者调控网络的关键节点.沙库巴曲和考比替尼作为靶向SLC7A11的候选药物,具有干预肾纤维化的潜在开发价值.
Objective To investigate the role of disulfidptosis in renal fibrosis and to perform high-throughput screening for candidate drugs that can delay its progression by targeting common targets shared by the disease and the phenotype.Methods Genes related to renal fibrosis were obtained from the GEO database and the GeneCards platform.Common targets shared between renal fibrosis and disulfidptosis were identified via Venn analysis.Protein-protein interaction(PPI)network was constructed,followed by Gene Ontology(GO)and Kyoto Encyclopedia of Genes and Genomes(KEGG)pathway enrichment analyses.The Connectivity Map(CMap)database was used to perform high-throughput drug screening for key targets.Molecular docking and molecular dynamics simulations were then applied to evaluate the binding characteristics and stability between candidate drugs and the core target(SLC7A11).Results Venn analysis showed 13 common targets shared between disulfidptosis and renal fibrosis,including GCLM,RPN1 and SLC7A11.Subse-quent CMap screening identified three drugs:floxuridine,sacubitril and cobimetinib.PPI analysis yielded 11 core targets,such as ACSL4,GCLM and HMGA2.KEGG enrichment analysis indicated that the 13 common targets were primarily involved in regulating pathways related to ferroptosis,and cancer.Ferroptosis and disulfidptosis are closely interrelated in terms of cystine metabolism and NADPH levels,suggesting a potential mechanism by which disulfidptosis regulates renal fibrosis.Molecular docking and molecular dynamics simulations demonstrated that sacubitril and cobimetinib exhibited strong and stable binding to the core target SLC7A11,which could regulate disulfidptosis and delay renal fibrosis progression by inhibiting SLC7A11 expression.Conclusion Disulfidpto-sis-related genes are associated with the progression of renal fibrosis,and SLC7A11 may serve as a key node connecting the regulatory networks of both processes.Therefore,sacubitril and cobimetinib,as candidate drugs targeting SLC7A11,have potential value for the intervention of renal fibrosis.
韦秋丽;许晓燕;廖准;柴鹏飞;钟建
广西中医药大学中医内科学教研室,南宁 530000广西中医药大学中医内科学教研室,南宁 530000广西中医药大学中医内科学教研室,南宁 530000广西中医药大学中医内科学教研室,南宁 530000广西中医药大学第一附属医院肾病科
医药卫生
双硫死亡肾纤维化治疗靶点药物筛选分子对接分子动力学模拟
disulfidptosisrenal fibrosistherapeutic targetdrug screeningmolecular dockingmolecular dynamics simulation
《山西医科大学学报》 2026 (5)
519-527,9
国家自然科学基金地区科学基金(82260866)广西自然科学基金面上项目(2023GXNSFAA026245)
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