辣椒NAM基因家族的全基因组鉴定及其在果实成熟期的表达分析OA
Genome-wide Identification and Expression Analysis of the NAM Gene Family During Fruit Ripening in Pepper(Capsicum annuum)
NAM 基因家族在植物生长发育、器官形成及非生物胁迫响应中发挥重要的调控作用.为研究辣椒果实发育过程中 NAM 基因家族成员的调控功能,本研究采用生物信息学方法对辣椒的 NAM 基因家族进行鉴定,并对其蛋白质理化性质、系统发育关系、染色体定位、保守基序分布、基因结构、物种共线性及基因表达等方面进行详细分析.结果表明:辣椒中共有 31 个 NAM 基因家族成员,分布在 11 条染色体上,且存在不均匀分布的现象;系统发育分析显示,辣椒的 NAM 基因家族成员分为 5 个亚族;基因结构分析显示,大部分CaNAM基因含有 5 个外显子;共线性分析表明,辣椒和番茄之间的基因共线性较辣椒与拟南芥之间更为密切,辣椒与番茄之间有 2 条额外的共线性区段,表明它们的进化关系更加接近;基因表达谱显示,6 个CaNAM基因在辣椒果实转色过程中的 4 个时期均表现出较高的表达量,特别是 CaNAM3基因在转色达到 50%时的表达量最高,与转录组数据结果一致,CaNAM28基因在红熟期呈现特异性显著上调,表明其可能是参与果实成熟调控的潜在候选基因.通过对辣椒 NAM 基因家族成员的初步鉴定及功能分析,为进一步探讨 NAM 基因家族成员在辣椒发育及果实颜色变化中的调控功能提供研究基础.
The NAM gene family play an important regulatory role in plant growth and development,organogenesis and abiotic stress responses.In order to study the regulatory function of NAM gene family members during fruit develop-ment,bioinformatics was used to identify the NAM gene family of pepper,and its protein physicochemical properties,phylogenetic relationships,chromosomal localization,conserved motif distribution,gene structure,species collinearity and gene expression were analyzed in detail.The results showed that there were 31 NAM gene family members distri-buted on 11 chromosomes,and there was a phenomenon of uneven distribution.Through phylogenetic analysis,the NAM gene family members of pepper were divided into five subfamilies.Gene structure analysis showed that most CaNAM genes contained 5 exons.Collinearity analysis showed that the gene collinearity between pepper and tomato was closer than that between pepper and Arabidopsis,and there were two additional collinearity segments between pepper and tomato,indicating that their evolutionary relationship was closer.The gene expression profile showed that the expression of the six CaNAM genes showed high expression levels in the four stages of the color transition process of pepper fruits,especially the expression of CaNAM3 gene was the highest when the color change reached 50%,which was consistent with the transcriptome data.Notably,the CaNAM28 gene showed a specific and significant upregulation during the red ripening stage,indicating that it may be a potential candidate gene involved in the regulation of fruit ri-pening.Through the preliminary identification and functional analysis of NAM gene family members in pepper,it would provide a research basis for further exploring the regulatory function of NAM gene family members in the de-velopment and fruit color transition of pepper.
刘琳;秦于玲;傅慧珍;刘维侠;刘子记
海南大学热带农林学院,海南 海口 570228||中国热带农业科学院热带作物品种资源研究所,海南 海口 571101中国热带农业科学院热带作物品种资源研究所,海南 海口 571101海南大学热带农林学院,海南 海口 570228中国热带农业科学院热带作物品种资源研究所,海南 海口 571101中国热带农业科学院热带作物品种资源研究所,海南 海口 571101
农业科技
辣椒NAM基因家族系统发育转录组分析
Capsicum annuumNAM gene familyphylogenytranscriptome analysis
《热带作物学报》 2026 (5)
1132-1143,12
八师石河子市财政科技计划项目(No.2023JB01)中央级公益性科研院所基本科研业务费专项(No.1630032022009).
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