甘蓝型油菜GSK基因家族的全基因组鉴定及核盘菌诱导应答分析OA
Genome-wide identification of the GSK gene family and analysis of its response to Sclerotinia sclerotiorum induction in Brassica napus
为解析甘蓝型油菜GSK基因家族在抗病中的功能机制,本研究通过全基因组鉴定该家族成员,结合生物信息学与分子实验,明确其对核盘菌侵染的响应规律.采用BlastP和HMMER方法从甘蓝型油菜基因组(ZS11)中鉴定GSK成员;利用MEGA7构建系统发育树;基于转录组测序(接种核盘菌48 h)和qRT-PCR验证分析表达模式.结果表明,在甘蓝型油菜基因组中共鉴定35个GSK基因家族成员,并将其命名为BnaSKs,所有成员均含保守的ST-Kc_GSK3激酶结构域.系统发育分析将其分为4个亚家族(Group Ⅰ-Ⅳ),共线性分析揭示了甘蓝型油菜基因组的进化动态及其与近缘物种的系统发育关联.启动子区域富含激素(ABA、JA)及逆境响应元件,推测其可能参与油菜抗性调控.组织特异表达分析显示BnaSKs的亚家族成员在不同发育阶段及器官中呈现功能分化,Group Ⅰ成员(BnaSK1.5和BnaSK1.6)在叶片中高表达,Group Ⅱ在叶和茎中优势表达,Group Ⅲ特异表达于花粉,Group Ⅳ在各组织广泛表达.在核盘菌侵染48 h后,Group Ⅰ成员(BnaSK1.2、BnaSK1.4、BnaSK1.5和BnaSK1.6)经转录组及qRT-PCR双重验证显著上调(P<0.01),其中BnaSK1.2和BnaSK1.4表达量达对照4倍;Group Ⅱ仅少数基因小幅上调,Group Ⅳ无显著变化,上述结果证实Group Ⅰ成员(BnaSK1.2和BnaSK1.4)可能参与到核盘菌侵染早期的防御过程.本研究系统揭示了甘蓝型油菜GSK基因家族的进化特征及核盘菌诱导下的表达动态,为抗病育种提供了关键候选基因.
To elucidate the functional mechanisms of the GSK(glycogen synthase kinase)gene family in dis-ease resistance in rapeseed(Brassica napus L.),this study aims to elucidate the response dynamics of this gene fami-ly to Sclerotinia sclerotiorum infection through genome-wide identification of its members combined with bioinfor-matic analyses and molecular experiments.Members of the GSK family were identified from the rapeseed genome(cv.ZS11)using BlastP and HMMER methods.A phylogenetic tree was constructed using MEGA7.Expression pat-terns were analyzed based on transcriptome sequencing(at 48 hpi with S.sclerotiorum)and qRT-PCR validation.The results showed that a total of 35 GSK gene family members were identified in B.napus genome,designated as BnaSKs.All members contained the conserved STKc_GSK3 kinase domain.Phylogenetic analysis classified them into four subfamilies(Group Ⅰ-Ⅳ).Collinearity analysis revealed the evolutionary dynamics of the B.napus genome and its phylogenetic relationships with related species.Promoter regions are enriched with hormone-responsive(ABA,JA)and stress-responsive cis-elements,suggesting they are involved in rapeseed resistance regulation.Tis-sue-specific expression analysis indicated functional divergence among BnaSK subfamily members across different developmental stages and organs:Group Ⅰ members(e.g.,BnaSK1.5,BnaSK1.6)are highly expressed in leaves;Group Ⅱ showed preferential expression in leaves and stems;Group Ⅲ are specifically expressed in pollen;and Group Ⅳ are widely expressed across various tissues.Following S.sclerotiorum infection(48 hpi),Group Ⅰ members(BnaSK1.2,BnaSK1.4,BnaSK1.5 and BnaSK1.6)are significantly upregulated(P<0.01),with BnaSK1.2 and BnaSK1.4 expression reaching four-fold relative to controls,only a few genes in Group Ⅱ are slightly up-regulated,while Group Ⅳ exhibited no significant changes.These results confirmed that Group Ⅰ members,particularly BnaSK1.2 and BnaSK1.4,were likely involved in the early defense response against S.sclerotiorum infection.This study systematically revealed the evolutionary characteristics of the GSK gene family in B.napus and its expression dynamics under S.sclerotiorum induction,providing key candidate genes for rapeseed disease resistance breeding.
彭广兰;刘红芳;吝彩玲;王明宇;华玮;刘文;郑明
三峡大学生物与制药学院,三峡区域植物遗传与种质创新重点实验室(三峡大学)/生物技术研究中心,湖北宜昌,443002||中国农业科学院油料作物研究所/农业农村部油料作物生物学与遗传育种重点实验室,湖北武汉,430062中国农业科学院油料作物研究所/农业农村部油料作物生物学与遗传育种重点实验室,湖北武汉,430062中国农业科学院油料作物研究所/农业农村部油料作物生物学与遗传育种重点实验室,湖北武汉,430062中国农业科学院油料作物研究所/农业农村部油料作物生物学与遗传育种重点实验室,湖北武汉,430062中国农业科学院油料作物研究所/农业农村部油料作物生物学与遗传育种重点实验室,湖北武汉,430062三峡大学生物与制药学院,三峡区域植物遗传与种质创新重点实验室(三峡大学)/生物技术研究中心,湖北宜昌,443002三峡大学生物与制药学院,三峡区域植物遗传与种质创新重点实验室(三峡大学)/生物技术研究中心,湖北宜昌,443002||中国农业科学院油料作物研究所/农业农村部油料作物生物学与遗传育种重点实验室,湖北武汉,430062
农业科技
甘蓝型油菜GSK基因家族全基因组鉴定核盘菌
Brassica napusGSK gene familygenome-wide identificationSclerotinia sclerotiorum
《中国油料作物学报》 2026 (2)
71-83,13
国家重点研发计划项目(2023YFF1000703)
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