小麦ARF基因家族全基因组鉴定及其在花发育中的潜在功能分析OA
Genome-wide identification of ARF gene family in wheat and analysis of its potential functions in flower development
[目的]生长素响应因子(Auxin response factor,ARF)是生长素信号通路的关键转录因子,在植物花器官的分化与形态建成中发挥重要调控作用.系统鉴定小麦ARF基因家族成员,并探索其在花器官发育中的潜在功能.[方法]基于小麦参考基因组,采用生物信息学方法对TaARF基因进行全基因组鉴定与系统发育、结构特征、共线性及顺式作用元件分析;结合RNA-Seq数据与qRT-PCR,研究其在HTS-1突变体的雄蕊(S)、雌蕊(P)及雌蕊化雄蕊(PS)中的表达特征,并构建蛋白互作网络,开展GO富集分析.[结果]共鉴定出89个TaARF基因,分布于18条染色体上,其中7A染色体富集最多.系统发育分析将其划分为6个亚家族,同亚家族内成员在结构域、基序和基因结构上高度一致.共线性分析显示TaARF基因主要通过节段重复扩增,并在单子叶植物中高度保守.RNA-Seq与qRT-PCR联合分析筛选出16个在P、S和PS间差异表达显著的TaARF基因,推测其参与雌雄蕊的分化与同源转化.互作网络与GO富集分析进一步揭示部分TaARF基因可能协同调控花器官发育.[结论]本研究系统解析了TaARF基因家族的组成、结构与表达特征,明确其在小麦花器官分化中的潜在功能,为进一步揭示生长素信号通路调控小麦生殖发育提供了理论依据和候选基因资源.
[Objective]Auxin Response Factors(ARFs)are key transcription factors in the auxin signaling pathway and play essential regula-tory roles in the differentiation and morphogenesis of floral organs in plants.The present study aimed to systematically identify the members of the ARF gene family members in wheat and explore their potential roles in floral organ development.[Method]Based on the wheat reference genome,we performed genome-wide identification and bioinformatics analysis of TaARF genes,including analyses of phylogenetic relation-ships,structural characteristics,collinearity and cis-acting elements.We further analyzed their expression patterns in stamens(S),pistils(P)and pistillody stamens(PS)of the HTS-1 mutant using RNA-Seq and qRT-PCR,constructed a protein-protein interaction network,and con-ducted Gene Ontology(GO)enrichment analysis.[Result]A total of 89 TaARF genes were identified,distributed across 18 chromosomes,with the highest density on chromosome 7 A.Phylogenetic analysis classified them into six subfamilies,and members within the same subfamily sharing highly conserved domains,motifs and gene structures.Collinearity analysis revealed that most TaARF genes expanded through segmen-tal duplication and were highly conserved among monocots.Combined analysis of RNA-Seq and qRT-PCR screened out 16 TaARF genes with significantly differential expression among P,S and PS,suggesting their involvement in pistil-stamen differentiation and homeotic conversion.The interaction network and GO enrichment analysis further indicated that some TaARF genes may collaboratively regulate floral organ devel-opment.[Conclusion]The study systematically analyzes the composition,structure and expression characteristics of the TaARF gene family,clarifies their potential roles in wheat floral organ differentiation,and offers theoretical basis and candidate gene resources for revealing the regulation of wheat reproductive development by the auxin signaling.
张彦;康超勇;廖明莉;杨芊;国钰环;吴一超;彭正松;杨在君
西华师范大学生命科学学院/西南野生动植物资源保护教育部重点实验室,四川南充 637000广元市农业科学研究院,四川广元 628017西华师范大学生命科学学院/西南野生动植物资源保护教育部重点实验室,四川南充 637000西华师范大学生命科学学院/西南野生动植物资源保护教育部重点实验室,四川南充 637000西华师范大学生命科学学院/西南野生动植物资源保护教育部重点实验室,四川南充 637000西华师范大学生命科学学院/西南野生动植物资源保护教育部重点实验室,四川南充 637000西昌学院/攀西特色作物研究与利用四川省重点实验室,四川西昌 615000西华师范大学生命科学学院/西南野生动植物资源保护教育部重点实验室,四川南充 637000
农业科技
小麦生长素ARF基因花发育
WheatAuxinARF geneFlower development
《西南农业学报》 2026 (3)
465-483,19
国家自然科学基金项目(32272066)四川省科技创新创业苗子工程培育项目(MZGC20240080)
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