哮喘中代谢相关的"lncRNA-miRNA-mRNA"ceRNA网络构建OA
Construction of metabolism-associated"lncRNA-miRNA-mRNA"ceRNA network in asthma
目的:构建一个竞争性内源性RNA(ceRNA)网络,以丰富哮喘的分子机制,探索新的治疗靶点.方法:通过基因表达综合数据库获取了与哮喘相关的基因表达数据,并进行了差异表达分析.利用加权基因共表达网络分析(WGCNA)方法构建了共表达网络,识别出与哮喘相关的基因模块.通过基因集富集分析和差异表达分析,筛选出关键基因,利用miRDB、TargetScan和starBase3.0在线数据库预测关键基因靶向的microRNA.同时,通过LncBase和ENCORI平台预测了microRNA与lncRNA之间的相互作用.排除了仅在细胞核和细胞外间隙中的lncRNA后,利用Cytoscape构建了ceRNA网络.通过实时荧光定量PCR验证ceRNA网络中关键因子的表达模式.结果:基因集富集分析显示与哮喘相关的差异表达基因主要集中于代谢通路.WGCNA和差异表达分析筛选出关键基因NADK.结合在线数据库和生物信息学算法构建了ceRNA网络"NADK-hsa-miR-214-3p-EPB41L4A-AS1".qRT-PCR结果显示在人气道上皮细胞系中构建的哮喘细胞模型中NADK和EPB41L‑AS1的表达水平明显上升,而miR‑214‑3p的表达水平明显下降.结论:"NADK-hsa-miR-214-3p-EPB41L4A-AS1"网络可能在在哮喘中起着潜在调控作用.本研究的发现可能为哮喘的早期诊断、病情监测和预后评估提供新的生物标志物.
Objective:To construct a competitive endogenous RNA(ceRNA)network to enrich the understanding of molecu-lar mechanisms of asthma and explore new therapeutic targets.Methods:We obtained gene expression data of asthma from a com-prehensive gene expression database and performed differential expression analysis.Weighted gene co-expression network analysis(WGCNA)was utilized to construct a co-expression network and identify asthma-associated gene modules.Key genes were select-ed through gene set enrichment analysis and differential expression analysis.Online databases miRDB,TargetScan,and star-Base3.0 were employed to predict microRNAs targeted by key genes.Additionally,interactions between microRNAs and long non-coding RNAs(lncRNAs)were predicted using the LncBase and ENCORI platforms.After excluding lncRNAs localized sole-ly in the nucleus and extracellular space,a ceRNA network was constructed using Cytoscape.The expression patterns of key fac-tors in the ceRNA network were validated by quantitative real-time PCR(qRT-PCR).Results:Gene set enrichment analysis re-vealed that differentially expressed genes associated with asthma were primarily enriched in metabolic pathways.WGCNA and dif-ferential expression analysis identified the key gene NADK.A ceRNA network,"NADK-hsa-miR-214-3p-EPB41L4A-AS1"was constructed by integrating online databases and bioinformatics algorithms.qRT-PCR results showed significant upregulation of NADK and EPB41L‑AS1 in asthma cell models established from human bronchial epithelial cells,while the expression level of miR‑214‑3p was significantly downregulated.Conclusion:The"NADK-hsa-miR-214-3p-EPB41L4A-AS1"network may play a potential regulatory role in asthma.The findings of this study may provide new biomarkers for early diagnosis,disease monitoring,and prognosis evaluation in asthma.
黄琳惠;丁秀秀;李积威;彭国彪;朱轶轲;韩花桂;丁毅鹏;张晓宇
海南省人民医院/海南医科大学附属海南医院 呼吸与危重症医学科,海南 海口 570311海南省人民医院/海南医科大学附属海南医院 呼吸与危重症医学科,海南 海口 570311海南省人民医院/海南医科大学附属海南医院 呼吸与危重症医学科,海南 海口 570311白沙黎族自治县人民医院 重症医学科,海南 白沙 572800海南省人民医院/海南医科大学附属海南医院 呼吸与危重症医学科,海南 海口 570311海南省人民医院/海南医科大学附属海南医院 门诊部,海南 海口 570311海南省人民医院/海南医科大学附属海南医院 呼吸与危重症医学科,海南 海口 570311海南省人民医院/海南医科大学附属海南医院 呼吸与危重症医学科,海南 海口 570311
医药卫生
哮喘竞争性内源性RNA代谢NAD激酶lncRNA
AsthmaCompetitive Endogenous RNAMetabolismNAD KinaselncRNA
《海南医科大学学报》 2026 (7)
540-548,9
This study was supported by the Hainan Provincial Natural Science Foundation of China(823RC559) 海南省自然科学基金资助(823RC559)
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