美洲大蠊肠道链霉菌潜在新种G30的鉴定及全基因组分析OA
Identification and whole-genome analysis of G30,a potential new species of Streptomyces from the gut of the Periplaneta americana
目的 从美洲大蠊(Periplaneta americana)肠道中分离并鉴定一株潜在链霉菌新种G30,通过多相分类鉴定与全基因组分析评估其次级代谢潜力.方法 采用稀释涂布法分离菌株,通过16S rRNA序列、形态及生理生化特征进行多相分类,采用CCK-8法检测粗提物对MCF-7、A549、HepG2细胞的抗肿瘤活性,并利用Nanopore测序和anti-SMASH 7.0预测生物合成基因簇新颖性.结果 菌株G30与模式菌株Streptomyces physcomitrii LD120的16S rRNA基因序列相似性为98.88%,但在碳源利用、生化反应及生长条件上存在显著差异,支持其作为链霉菌属潜在新种.其乙酸乙酯粗提物对MCF-7、A549、HepG-2细胞均表现出细胞毒性,其中对MCF-7细胞的抑制活性最强(IC50=64.16 μg/mL).基因组分析共鉴定出33个生物合成基因簇(BGCs),其中同源性低于30%的基因簇占30.3%,18.2%为孤儿簇,新颖性较高;预测其可合成murayaquinone、chrysomycin及ilamycin等潜在抗肿瘤化合物.结论 菌株G30作为一株具有次级代谢潜力的链霉菌潜在新种,为抗肿瘤先导化合物的发现提供了重要菌种资源.
Objective To isolate and characterize a potential novel species of Streptomyces,designated G30,from the gut of Periplaneta americana and evaluate its secondary metabolic potential through polyphasic taxonomy and whole-genome analysis.Methods Bacterial isolation was performed using the dilution plating method.The isolated strain was subsequently identified through polyphasic taxonomy,which included 16S rRNA gene sequencing,morphological observation,and physiological and biochemical characterization.The antitumor activity of its crude extracts against MCF-7,A549,and HepG2 cells was evaluated using the CCK-8 assay.Additionally,whole-genome sequencing was carried out on the Nanopore platform,and the biosynthetic gene clusters(BGCs)were analyzed for novelty with antiSMASH 7.0.Results Strain G30 exhibited a 16S rRNA gene sequence similarity of 98.88%with the type strain Streptomyces physcomitrii LD120.However,significant differences were observed in carbon source utilization,biochemical reactions,and growth conditions,which supported its status as a potential novel species within the genus Streptomyces.The ethyl acetate crude extract of strain G30 demonstrated cytotoxic activity against MCF-7,A549,and HepG-2 cells,with the strongest inhibitory effect observed on MCF-7 cells(IC50=64.16 μg/mL).Genomic analysis identified a total of 33 BGCs.Among these,gene clusters with homology below 30%account for 30.3%of the total,and 18.2%were identified as orphan clusters,indicating a high degree of novelty.These BGCs were predicted to encode the synthesis of potentially antitumor compounds such as murayaquinone,chrysomycin,and ilamycin.Conclusion Strain G30 represents a potential novel species of Streptomyces with highly novel secondary metabolic potential,serving as an important microbial resource for the discovery of antitumor lead compounds.
王丽君;温思浩;张翔;郑文娜;陈志宇;刘文彬;金小宝
广东药科大学基础医学院,广东 广州 510006||广东省生物活性药物研究重点实验室,广东 广州 510006广东药科大学基础医学院,广东 广州 510006||广东省生物活性药物研究重点实验室,广东 广州 510006广东药科大学基础医学院,广东 广州 510006||广东省生物活性药物研究重点实验室,广东 广州 510006广东药科大学基础医学院,广东 广州 510006||广东省生物活性药物研究重点实验室,广东 广州 510006广东药科大学基础医学院,广东 广州 510006||广东省生物活性药物研究重点实验室,广东 广州 510006广东药科大学基础医学院,广东 广州 510006||广东省生物活性药物研究重点实验室,广东 广州 510006广东药科大学基础医学院,广东 广州 510006||广东省生物活性药物研究重点实验室,广东 广州 510006
医药卫生
美洲大蠊链霉菌全基因组测序多相分类鉴定抗肿瘤活性
Periplaneta americanastreptomyceswhole-genome sequencingpolyphasic taxonomic identificationantitumor activity
《广东药科大学学报》 2026 (2)
125-134,10
广东省普通高校特色创新项目(2025KTSCX055)广东省医学科学技术研究基金资助项目(A2024478)广州市科技计划项目(2025A04J3623)
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