沙林杨POD基因家族生信特征及响应光肩星天牛危害的表达模式OA
Bioinformatics Characterization and Expression of POD Gene Family in Populus deltoides Induced by Anoplophora glabripennis
沙林杨(Populus deltoides var.'Shalinyang')是我国西北地区重要的生态经济型树种,兼具生态修复和抗虫特性.为研究沙林杨关键次级代谢产物过氧化物酶(peroxidase,POD)基因PdPOD响应光肩星天牛危害的分子机制,基于转录组测序数据,对PdPOD基因家族成员进行筛选和鉴定,并对其进行生物信息学分析;利用qRT-PCR分别检测健康和被光肩星天牛危害7、18和31 d的沙林杨韧皮部POD基因的表达量.结果表明,共鉴定出42个PdPOD基因家族成员,其开放阅读框为327~1 134 bp;系统发育分析将其分为6个亚家族,不同亚家族成员在结构特征、启动子元件和表达模式上存在显著差异;保守基序及蛋白质结构域显示,42个成员均含植物过氧化物酶典型结构域.基于转录组数据对POD基因家族成员在虫害胁迫下的表达模式进行分析,发现有19个基因上调.qRT-PCR结果表明,PdPOD3、PdPOD31等基因在天牛危害后表达量显著上调,表明这些基因可能在沙林杨的抗虫防御反应中发挥重要作用.研究结果不仅为深入理解沙林杨中PdPOD基因家族的抗虫功能提供了理论基础,还为沙林杨抗性分子育种提供了潜在基因资源.
Populus deltoides var.'Shalinyang'is an important ecological and economic tree species in the northwest region of China,known for its ecological restoration capabilities and insect resistance.To study the resistance mechanisms the peroxidase(POD)gene PdPOD family which is key secondary metabolite of Populus deltoids on Anoplophora glabripennis(Asian longhorned beetle),the PdPOD gene family was screened and identified based on the transcriptome data of Populus deltoides var.Shalinyang,and was anslyzed by the bioinformatics analysis.And the expression level of the PdPOD gene in phloem of Populus deltoides was detected by qRT-PCR in healthy individuals and those affected by Asian longhorned beetle for 7,18 and 31 d,respectively.The results showed that 42 PdPOD genes were identified,with open reading frames(ORFs)ranging from 327 to 1 134 bp.Phylogenetic analysis classified 42 PdPOD genes into 6 subfamilies,with significant differences in structural features,promoter elements and expression patterns among 6 subfamily members.Additionally,the conserved motifs and protein domains indicated that all 42 members contained the typical domain of plant_peroxidase.The expression patterns of the POD gene family members under insect stress were analyzed based on transcriptome data,the results showed that 19 genes were upregulated.The qRT-PCR results indicated that genes such as PdPOD3 and PdPOD31 exhibited high expression levels under insect stress,suggesting their potential important role in the insect defense response of Populus deltoides var.Shalinyang.Above results not only provided theoretical foundation for understanding the insect resistance functions of PdPOD gene family,but also offered potential genetic resources for the breeding of resistant Populus deltoides var.Shalinyang.
杜昊阳;徐创军;刘欢;孙楠;刘建凤;蔺冬冬;董丽君
河北大学生命科学学院,河北 保定 071002巴彦淖尔市农田建设服务中心,内蒙古 巴彦淖尔 015000河北大学生命科学学院,河北 保定 071002河北大学生命科学学院,河北 保定 071002河北大学生命科学学院,河北 保定 071002河北大学生命科学学院,河北 保定 071002河北大学生命科学学院,河北 保定 071002
农业科技
沙林杨转录组POD基因家族生物信息学分析表达分析
Populus deltoides var.'Shalinyang'transcriptomePOD gene familybioinformatics analysisexpression analysis
《中国农业科技导报》 2026 (4)
46-56,11
国家自然科学基金项目(32271891)河北省自然科学基金项目(C2024201002)内蒙古自治区科技计划项目(2024JBGS0002)大学生创新训练计划项目(DC2025345).
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