首页|期刊导航|中国畜禽种业|乳清蛋白α基因LALBA表达模式和关键调控元件鉴定

乳清蛋白α基因LALBA表达模式和关键调控元件鉴定OA

Expression pattern and adentification of key regulatory elements of the whey protein alpha gene LALBA

中文摘要英文摘要

α-乳白蛋白(α-lactalbumin,LALBA基因编码)是乳清蛋白的核心组分,对乳腺发育与乳汁合成具有关键作用.该研究旨在系统解析LALBA基因在多物种中的表达模式及转录调控机制.研究选取了包括奶牛、水牛、山羊、绵羊、马鹿和双峰驼等在内的11种哺乳动物的RNA-seq数据、6个物种的ATAC-seq数据,并结合奶牛多组织RNA-seq数据及其乳腺组织scRNA-seq数据.通过整合多组学数据,从物种、组织、细胞和分子水平系统分析LALBA的表达特征;利用染色质可及性分析与序列比对,鉴定其保守调控区域;进一步通过转录因子筛选与KEGG通路富集分析,探索其上游调控网络.结果表明,LALBA在11种哺乳动物乳腺组织中均呈现高特异性表达(TPM>4000),且在奶牛中主要定位于分泌型乳腺上皮细胞.研究在其上游及第一外显子附近鉴定出一个在反刍动物中序列高度相似(≥94.5%)且进化保守的调控区域,并筛选出IRF3、ELF5、NFIB等10个核心转录因子.KEGG富集通路分析发现这些转录因子显著富集于Toll样受体和NOD样受体信号通路.综上所述,LALBA的表达可能参与乳腺特异性发育以及免疫反应,其核心调控元件在偶蹄目物种中功能保守.

α-lactalbumin(encoded by the LALBA gene)is a core component of whey protein and plays a crucial role in mammary gland development and milk synthesis.This study aimed to systematically analyze the expression patterns and transcriptional regulatory mechanisms of the LALBA gene across multiple species.The study utilized RNA-seq data from 11 mammalian species including cattle,buffalo,goat,sheep,red deer,and Bactrian camel,along with ATAC-seq data from six species.This was combined with multi-tissue RNA-seq data from cattle and single-cell RNA-seq data from their mammary glands.Through multi-omics data integration,LALBA expression characteristics were systematically analyzed at species,tissue,cellular,and molecular levels.Chromatin accessibility analysis and sequence alignment identified conserved regulatory regions.Upstream regulatory networks were further explored via transcription factor screening and KEGG pathway enrichment analysis.Results indicate that LALBA exhibits highly specific expression(TPM>4000)in mammary tissues across 11 mammalian species,primarily localized to secretory mammary epithelial cells in dairy cattle.An evolutionarily conserved regulatory region with high sequence similarity(≥ 94.5%)across ruminants was identified upstream and near the first exon,screening out 10 core transcription factors including IRF3,ELF5 and NFIB.KEGG pathway enrichment analysis revealed significant enrichment of these transcription factors in Toll-like receptor and NOD-like receptor signaling pathways.In summary,LALBA expression likely participates in mammary-specific development and immune responses,with its core regulatory elements exhibiting functional conservation across artiodactyl species.

张悦;王禹;樊慧梅;李鑫妹;路钰怡;魏振宇

西北农林科技大学动物科技学院,陕西杨凌 712100西北农林科技大学动物科技学院,陕西杨凌 712100||西北农林科技大学家畜生物学重点实验室,陕西杨凌 712100||国家乳业技术创新中心,内蒙古呼和浩特 010000西北农林科技大学动物科技学院,陕西杨凌 712100西北农林科技大学动物科技学院,陕西杨凌 712100西北农林科技大学动物科技学院,陕西杨凌 712100西北农林科技大学动物科技学院,陕西杨凌 712100

农业科技

LALBA基因RNA-seqATAC-seq转录调控跨物种保守

LALBA geneRNA-sqeATAC-seqTranscriptional regulationConservative across species

《中国畜禽种业》 2026 (3)

28-40,13

国家乳业技术创新中心项目(2024-JSGG-028)中国国家重点研发计划(2021YFF1001000).

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