基于生物信息学方法筛选肝纤维化关键基因及潜在治疗药物预测OA
Screening of key genes for liver fibrosis based on bioinformatics methods and potential therapeutic drug prediction
目的 筛选肝纤维化发病的关键基因,并在动物水平验证其表达,评估其在肝纤维化及肝癌中的重要性和潜在生物学功能.方法 整合分析BDL、高脂饮食、MCD、CCL4诱导的肝纤维化GEO数据集(GSE174099、GSE83596、GSE35961、GSE55747),筛选差异基因;利用DAVID进行GO/KEGG富集,STRING构建蛋白互作网络,HPA查询蛋白分布;建立动物模型并采用免疫印迹验证关键蛋白表达;分析其免疫相关性和ROC诊断价值;预测潜在药物、miRNA及转录因子.结果 共获得105个共同差异基因,富集于细胞迁移、黏附、凋亡及激酶活性等过程.基于Degree算法筛得Cd44、Col1a1、Col4a1、Nid1、Lgals3、Trem2、Anxa2等关键基因,进一步确定Anxa2和Lgals3为核心基因.二者在肝癌中上调并与多种免疫检查点因子高度相关.动物实验验证Anxa2在肝纤维化中显著升高,且具有良好诊断效能.药物预测显示青蒿醇、氟轻松等可能为其潜在靶向药物,mmu-miR-101a-3p等miRNA及RCOR1、HCFC1等转录因子可能参与其调控.结论 Anxa2为肝纤维化诊断与治疗的潜在关键基因,并可能成为肝纤维化与肝癌的共性治疗靶点.
Objective To identify key genes involved in the pathogenesis of liver fibrosis and validate their ex-pression in animal models,assessing their significance and potential biological functions in liver fibrosis and hep-atocellular carcinoma.Methods We integrated and analyzed GEO datasets(GSE174099,GSE83596,GSE35961,GSE55747)from bile duct ligation(BDL),high-fat diet,methionine-and choline-deficient(MCD)diet,and CCl4-induced liver fibrosis models to screen for differentially expressed genes(DEGs).GO and KEGG enrichment analyses were performed using DAVID,a protein-protein interaction(PPI)network was constructed with STRING,and protein distribution was queried via the HPA database.Animal models were es-tablished,and key protein expression was validated by western blot.Immune correlation and ROC diagnostic val-ue were analyzed.Potential drugs,miRNAs,and transcription factors were predicted.Results We identified 105 common DEGs,enriched in processes such as cell migration,adhesion,apoptosis,and kinase activity.Key genes including Cd44,Col1a1,Col4a1,Nid1,Lgals3,Trem2,and Anxa2 were screened based on the degree algorithm,with Anxa2 and Lgals3 further identified as core genes.Both were upregulated in hepatocellular carci-noma and highly correlated with various immune checkpoint factors.Animal experiments confirmed significantly elevated Anxa2 expression in liver fibrosis,demonstrating good diagnostic performance.Drug prediction sugges-ted artesunate,fluocinolone acetonide,among others,as potential targeted drugs for Anxa2.miRNAs like mmu-miR-101a-3p and transcription factors like RCOR1 and HCFC1 were predicted to be involved in its regulation.Conclusion Anxa2 is a potential key gene for the diagnosis and treatment of liver fibrosis and may serve as a common therapeutic target for both liver fibrosis and hepatocellular carcinoma.
李嘉静;曹志豪;欧玲;陈浩;李兵;杜倩;朱厅厅;孟令杰
遵义医科大学附属医院诊断学实验室,贵州遵义 563000贵州大学医学院,贵州贵阳 550025贵州大学医学院,贵州贵阳 550025贵州大学医学院,贵州贵阳 550025贵州大学医学院,贵州贵阳 550025贵州省人民医院内镜消化科,贵州贵阳 550002贵州大学医学院,贵州贵阳 550025遵义医科大学基础医学院生命科学研究院,贵州遵义 563006
医药卫生
肝纤维化多模型和多组学分析差异表达基因膜联蛋白A2治疗靶点
liver fibrosismulti-model and multi-omics analysisdifferentially expressed genesAnxa2ther-apeutic targets
《遵义医科大学学报》 2026 (3)
239-251,13
国家自然科学基金资助项目(NO:82460759)贵州省卫健委科技专项(NO:gzwkj2024-348)贵州大学大学生创新创业训练计划项目(NO:gzusc2023127).
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