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湘江细鳞鲴群体遗传多样性及种群历史动态研究OA

POPULATION GENETIC DIVERSITY AND HISTORICAL DYNAMICS OF XENOCYPRIS MICROLEPIS IN THE XIANGJIANG RIVER

中文摘要英文摘要

本研究共采集湘江永州段(YZ)、衡阳段(HY)、东江湖段(DJH)、茶陵段(CL)和浏阳段(LY)五个群体的细鳞鲴(Xenocypris microlepis)188尾,并利用线粒体DNA的D-Loop区序列,分析湘江细鳞鲴的群体遗传多样性及种群历史动态.在测序获得的188条D-loop序列中共检测出变异位点37个,单倍型24个,单倍型多样性(Hd)、核苷酸多样性(Pi)和群体间遗传距离分别为0.755-0.911、0.00277-0.00556和0.00467-0.00658.24个单倍型中仅Hap1为5个群体的共享单倍型,且单倍型间未形成与地理位置相对应的进化支聚类关系.分子方差分析结果显示,5个群体的遗传变异主要来源于群体内部(90.48%),而群体间的遗传差异仅占总变异的9.52%.UPGMA聚类分析显示,HY与LY聚为一支,YZ与CL聚为一支.基于Fst指数的计算表明,HY与DJH和CL存在低等程度的遗传分化,DJH与YZ和CL,LY与其他4个群体均存在中等程度的遗传分化,而YZ与CL和HY均不存在分化.Mantel test分析发现,湘江细鳞鲴群体遗传差异与地理距离间不存在显著相关性.中性检验及核苷酸错配分析表明湘江细鳞鲴历史上未经历大规模种群扩张或收缩,而贝叶斯天际线模型推演结果则揭示了从25万年前至今,除HY细鳞鲴群体扩张外,其余4个群体均呈现收缩态势.研究结果对于评价湘江流域细鳞鲴资源恢复效果及种质资源保护与利用提供参考.

A total of 188 Xenocypris microlepis specimens were collected from five populations in the Xiangjiang River:Yongzhou(YZ),Hengyang(HY),Dongjiang Lake(DJH),Chaling(CL),and Liuyang(LY).Mitochondrial DNA D-loop sequences were used to analyze the genetic diversity and historical demography.Analysis of the 188 sequences revealed 37 variable sites and 24 haplotypes.Haplotype diversity(Hd),nucleotide diversity(Pi),and genetic distances among populations ranged from 0.755 to 0.911,0.00277 to 0.00556,and 0.00467 to 0.00658,respectively.Among the 24 haplotypes,only Hap1 was shared across all five populations,and no phylogenetic structure was observed.Analysis of molecular variance(AMOVA)revealed that most genetic variation occurred within populations(90.48%),while only 9.52%occurring among populations.UPGMA clustering based on genetic distance grouped HY with LY and YZ with CL.Fst-based estimations indicated low genetic differentiation between HY and DJH and between HY and CL;moderate differentiation between DJH and YZ,DJH and CL,and between LY and the other four populations;and no differentiation between YZ and CL or between YZ and HY.A Mantel test showed no significant correlation between genetic differentiation and geographic distance.Neutrality tests and mismatch distribution analysis suggested indicated no evidence of historical population expansion or contraction in the Xiangjiang River,whereas Bayesian skyline plots indicated a declining trend over the past 250000 years in all populations except HY.These findings provide valuable insights for evaluating the effectiveness of artificial restocking and for guiding conservation and utilization of X.microlepis genetic resources in the Xiangjiang River basin.

周思洁;许丽美;刘宇路;黄艳飞;李德亮;龚宇舟

湖南农业大学水产学院,长沙 410128湖南农业大学水产学院,长沙 410128湖南农业大学水产学院,长沙 410128湖南农业大学水产学院,长沙 410128湖南农业大学水产学院,长沙 410128湖南农业大学水产学院,长沙 410128||岳麓山实验室,长沙 410128

生物科学

湘江遗传多样性D-loop单倍型种群动态细鳞鲴

Xiangjiang RiverGenetic diversityD-loopHaplotypePopulation dynamicsXenocypris microlepis

《水生生物学报》 2026 (3)

1-10,10

国家重点研发计划(2023YFD2400900)湖南省农业农村厅专项(湘财农指[2024]52号)湖南省水产产业技术体系(HARS-07)上海市2022年度科技创新行动计划(22YF1429200)资助[Supported by the National Key Research and Development Program(2023YFD2400900)Special Project of Hunan Provincial Department of Agriculture and Rural Affairs(Xiang Cai Nong Zhi[2024]No.52)Hunan Aquatic Industry Technology System(HARS-07)Shanghai Municipal 2022 Science and Technology Inno-vation Action Plan(22YF1429200)]

10.3724/1000-3207.2025.2025.0324

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