鸡RACK1基因克隆与生物信息学分析及其在鸡不同组织中的表达分析OA
Cloning,bioinformatic analysis of chicken RACK1 gene and tissue expression analysis in chickens
为探究鸡活化蛋白激酶C1受体(RACK1)蛋白的生物学特性,及其在不同组织中的表达模式以及对传染性法氏囊病病毒(IBDV)复制的影响,本研究克隆了鸡RACK1基因,并采用多种生物信息学方法对其编码的蛋白质进行结构与功能的预测.构建鸡RA CK1基因的真核表达载体,通过Western blot技术验证质粒表达及其过表达对IBDV复制的影响,利用qRT-PCR技术检测鸡不同组织中RACK1的相对表达水平.结果显示,鸡RACK1蛋白编码317个氨基酸残基,分子量约34.87 ku,理论等电点为7.6.该蛋白不含跨膜结构域和信号肽,含有7个典型的WD40结构域,二级结构主要由无规则卷曲和延伸链构成,分别占比36.59%和45.11%.蛋白质相互作用预测提示其可能与RPL38、RPL27A、RPL23、RPLP0、RPS2等核糖体蛋白相互作用.系统发育分析显示RACK1在不同物种中高度保守.构建pCAGGS-HA-chRACK1真核表达载体,利用Western blot验证其在细胞中的表达,并通过IBDV感染模型发现RACK1的过表达可显著促进病毒的复制.进一步通过qRT-PCR检测鸡不同组织中的RACK1基因的表达情况,结果显示其在心脏中表达最高,在脾脏中表达最低.综上,本研究从分子水平解析了鸡RACK1蛋白的结构特征和组织分布特性,并证实其可正向调控IBDV的复制,为深入研究RACK1在鸡病毒感染与免疫应答中的功能提供重要的理论依据.
This study aims to investigate the biological characteristics of the chicken receptor for activated C kinase 1(RACK1)protein,assess its role in infectious bursal disease virus(IBDV)replication,and examine its expression pat-terns across various chicken tissues.The RACK1 gene from chickens was cloned,and structural and functional predic-tions of the encoded protein were performed using various bioinformatics tools.A eukaryotic expression vector carrying chicken RACK1 gene was constructed,and its expression was verified by Western blot.The effect of RACK1 overexpres-sion on IBDV replication was also evaluated.Furthermore,the relative expression levels of RACK1 in different chicken tissues were determined by qRT-PCR.The study revealed that chicken RACK1 consisted of 317 amino acid residues,with a molecular mass of approximately 34.87 ku.The protein lacks transmembrane domains and signal peptide but contained seven typical WD40 domains.Its secondary structure was primarily composed of random coils(36.59%)and extended strands(45.11%).Protein-protein interaction predictions suggested that RACK1 may interact with ribosomal proteins such as RPL38,RPL27A,RPL23,RPLP0,and RPS2.Phylogenetic analysis demonstrated that RACK1 was highly conserved across several species.The pCAGGS-HA-chRACK1 eukaryotic expression vector was successfully constructed and con-firmed to be expressed in cells.In an IBDV infection model,RACK1 overexpression significantly enhanced viral replica-tion.qRT-PCR analysis of different chicken tissues revealed that RACK1 expression was highest in the heart and lowest in the spleen.In conclusion,this study characterizes the molecular structure and tissue distribution of chicken RACK 1 and demonstrates its positive regulatory role in IBDV replication,providing a theoretical basis for further research into RACK1 function in avian viral infections and immune responses.
曹书楷;夏蕾;平玉宇;王强州;尹娜;白皓;陈世豪
中国农业大学动物科学技术学院,北京 100193扬州大学表观遗传学与表观基因组学研究所,江苏扬州 225009扬州大学表观遗传学与表观基因组学研究所,江苏扬州 225009扬州大学表观遗传学与表观基因组学研究所,江苏扬州 225009扬州大学表观遗传学与表观基因组学研究所,江苏扬州 225009扬州大学表观遗传学与表观基因组学研究所,江苏扬州 225009扬州大学表观遗传学与表观基因组学研究所,江苏扬州 225009
农业科技
鸡RACK1基因真核表达载体生物信息学分析组织表达
chickenRACK1 geneeukaryotic expression vectorbioinformatics analysistissue expression
《扬州大学学报(农业与生命科学版)》 2026 (1)
65-73,9
国家肉鸡产业技术体系项目(CARS-41)扬州大学教改课题博士专项(YZUJX2020-C16)常州市现代农业科技创新中心项目[CAIC(2023)001]
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