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摄食不同饵料对翘嘴鳜脑组织、肝组织中基因表达的影响OA

Effects of different feeding regimens on gene expression in brain and liver tissues of mandarin fish(Siniperca chuatisi)

中文摘要英文摘要

为研究肉食性翘嘴鳜适应配合饲料及食性转换的分子调控机制,本研究采用转录组测序方法,对摄食活饵的对照组(LFSC)和摄食配合饲料的试验组(CFSC)翘嘴鳜的脑组织、肝组织的基因表达模式进行深入分析.结果表明,共得到有效数据约 92.00 Gb,其中质量数大于 20 的碱基所占百分比(Q20)、质量数大于 30 的碱基所占百分比(Q30)分别在 98.00%、96.00%以上,G+C含量区间为44.94%~50.19%.比较转录组分析结果显示,基于活饵组与饲料组的比较数据,从翘嘴鳜脑组织中共获得1 405个差异表达基因(Differentially expressed genes,DEG),其中 486 个DEG上调表达,919 个DEG下调表达;基于活饵组与饲料组的比较数据,从翘嘴鳜肝组织中获得2 850个DEG,其中1 298个DEG上调表达,1 552个DEG下调表达.对翘嘴鳜脑组织、肝组织中的差异表达基因进行京都基因与基因组百科全书(KEGG)功能富集分析发现,翘嘴鳜肝组织中的DEG主要富集于类固醇生物合成、脂肪酸降解、丙酮酸代谢及抗原加工与呈递等信号通路,脑组织中的DEG主要富集于细胞因子-细胞因子受体互作等信号通路.进一步通过功能注释筛选到昼夜节律通路相关基因clockb、per1b、RORA,学习信号通路相关基因creb1b,视网膜光敏感性通路相关基因rdh8a、rgra,食欲调控通路相关基因tac1、eif4eb,代谢通路相关基因pck1 等.筛选到的基因可作为参与决定翘嘴鳜独特食物偏好的候选基因.本研究结果可为下一步揭示翘嘴鳜适应人工配合饲料及摄食偏好的转变提供理论支撑,有助于培育易驯食人工配合饲料翘嘴鳜新品系.

To investigate the molecular mechanisms underlying the adaptation to formulated feed and dietary transi-tion in carnivorous mandarin fish(Siniperca chuatsi),we performed deep transcriptome sequencing of brain and liver tis-sues from the live-food control group(LFSC)and the formulated-feed treatment group(CFSC).A total of approximately 92.00 Gb of clean data were obtained,with Q20≥98.00%and Q30≥96.00%,and the G+C content ranged from 44.94%to 50.19%.Comparative transcriptomic analysis identified 1 405 differentially expressed genes(DEGs)in the brain(LFSC vs.CFSC),with 486 up-regulated and 919 down-regulated.Similarly,2 850 DEGs were identified in the liver,including 1 298 up-regulated and 1 552 down-regulated.Kyoto Encyclopedia of Genes and Genomes(KEGG)enrichment analysis showed that liver DEGs were significantly enriched in steroid biosynthesis,fatty-acid degradation,pyruvate metabolism and antigen processing and presentation,whereas brain DEGs were mainly enriched in the cytokine-cytokine receptor interaction pathway.Further functional annotation high-lighted DEGs associated with circadian rhythm(clockb,per1b,RORA),learning/memory(creb1b),retinal photo-transduction(rdh8a,rgra),appetite regulation(tac1,eif4eb)and metabolism(pck1).These genes represent candidate regulators of the species-specific food preference in mandarin fish.The findings provide a theoretical framework for elucida-ting the molecular basis of dietary adaptation and preference shift in mandarin fish,and will facilitate the breeding of novel strains that readily accept formulated feed.

周扬达;郑建波;李飞;刘士力;蒋文枰;迟美丽;程顺;张海琪

浙江海洋大学,浙江 舟山 316022||浙江省淡水水产研究所,浙江 湖州 313001浙江省淡水水产研究所,浙江 湖州 313001浙江省淡水水产研究所,浙江 湖州 313001浙江省淡水水产研究所,浙江 湖州 313001浙江省淡水水产研究所,浙江 湖州 313001浙江省淡水水产研究所,浙江 湖州 313001浙江省淡水水产研究所,浙江 湖州 313001浙江海洋大学,浙江 舟山 316022||浙江省淡水水产研究所,浙江 湖州 313001

农业科技

翘嘴鳜不同摄食饵料转录组测序差异表达基因

Siniperca chuatisidifferent feeding regimenstranscriptome sequencingdifferentially expressed genes

《江苏农业学报》 2026 (2)

382-391,10

重点研发计划项目"农业双强"专项(2024ZD2046)

10.3969/j.issn.1000-4440.2026.02.017

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