首页|期刊导航|水生生物学报|高顶鳞皮蚌F和M型线粒体基因组全序列结构比较及双单亲遗传下的进化分析

高顶鳞皮蚌F和M型线粒体基因组全序列结构比较及双单亲遗传下的进化分析OA

COMPARATIVE ANALYSIS OF THE F AND M-TYPE MITOCHONDRIAL GENOME ARCHITECTURE AND EVOLUTION IN LEPIDODESMA LANGUILATI(BIVALVIA:UNIONIDAE)UNDER DOUBLY UNIPARENTAL INHERITANCE

中文摘要英文摘要

为探讨蚌类在DUI机制下的进化特征,本文通过测序和比较高顶鳞皮蚌F与M型线粒体基因组,并结合系统发育分析和选择压力分析开展研究.结果表明,高顶鳞皮蚌F/M型线粒体全基因组序列全长分别为15768和17008 bp,A+T含量在两型中均约64%,呈AT偏好性;共编码37个基因,包括13个蛋白质编码基因(PCGs),22个tRNA和2个rRNA,其中26个基因位于轻链、11个基因位于重链;tRNA结构存在缺陷,F/M型trnS缺失tψc环,M型trnY缺失DHU环;相对密码子使用频率(RSCU)分析显示TTT在F型(RSCU=1.55)和M型(RSCU=1.63)中均为使用频率最高的密码子;系统发育树显示F/M型线粒体明确分化为两大单系群;基因选择压力分析提示M型Ka/Ks值高于F型,atp8为潜在的性别分化相关基因.本研究系统揭示了高顶鳞皮蚌F和M型线粒体基因组的结构差异、碱基组成、密码子特征及非编码区布局,支持了蚌类F与M型基因组在系统发育上的并行进化模式,不仅为该物种线粒体基因组的深入比较和应用研究提供基础数据,更有助于深化对DUI现象的理解.

Doubly uniparental inheritance(DUI)of mitochondrial DNA,a rare exception to the strict maternal inheri-tance typical in animals,occurs only in certain bivalve families and is characterized by distinct gender-associated mtDNA lineages through males(M-type)or females(F-type).Due to frequent undetection,M-type sequences remain underrepresented in GenBank,impeding deeper understanding of DUI phenomenon.In this study,we sequenced and analyzed the complete M and F mitogenomes of the freshwater mussel Lepidodesma languilati.The complete mito-chondrial genome sequences of the F-type and M-type in L.languilati were 15768 and 17008 bp in length,respectively.Both exhibited a strong AT bias,with an A+T content of approximately 64%.Each genome encoded 37 genes,includ-ing 13 protein-coding genes(PCGs),22 tRNAs,and 2 rRNAs.Twenty-six genes were located on the light strand and 11 on the heavy strand.Structural defects were observed in several tRNAs:both F and M-type trnS genes lacked the TψC loop,and the M-type trnY gene lacked the DHU arm.Relative synonymous codon usage(RSCU)analysis showed that TTT was the most frequently used codon in both F-type(RSCU=1.55)and M-type(RSCU=1.63)genomes.Phyloge-netic analysis clearly demonstrated that the F and M-type mitochondrial genomes form two distinct monophyletic clades.Selective pressure analysis suggests atp8 as a potential sex-differentiation-related gene.In summary,this study provides the first comprehensive characterization of the structural differences,base composition,codon usage patterns,and non-coding region organization between the F and M-type mitochondrial genomes of L.languilati,supporting a pattern of parallel evolution between the two genomes in phylogenetic context.These findings not only provide funda-mental data for further comparative and applied studies of the mitochondrial genome in this species,but also contribute to a deeper understanding of the DUI phenomenon.

谢玲莉;姜敏;姜潮;刘湘蓉;刘凯

中国水产科学研究院淡水渔业研究中心,农业农村部淡水渔业和种质资源利用重点实验室,无锡 214081中国水产科学研究院淡水渔业研究中心,农业农村部淡水渔业和种质资源利用重点实验室,无锡 214081南京农业大学,无锡渔业学院,无锡 214081湖南省水产研究所(湖南省水产原种场),长沙 410153中国水产科学研究院淡水渔业研究中心,农业农村部淡水渔业和种质资源利用重点实验室,无锡 214081||南京农业大学,无锡渔业学院,无锡 214081

生物科学

线粒体基因组双单亲遗传系统发育分析高顶鳞皮蚌

MitogenomeDoubly uniparental inheritancePhylogenetic analysisLepidodesma languilati

《水生生物学报》 2026 (1)

94-105,12

中央级公益性科研院所基本科研业务费专项资金(2023TD11)资助[Supported by the Central Public-interest Scientific Institu-tion Basal Research Fund,CAFS(2023TD11)]

10.3724/1000-3207.2025.2025.0243

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