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大麦GATA基因家族的全基因组鉴定及表达分析OA

Genome-Wide Identification and Expression Analysis of GATA Gene Family in Barley

中文摘要英文摘要

GATA基因家族成员是植物重要的转录因子,广泛参与植物生长发育及多种生理生化过程.为了解GATA家族成员在大麦中的分布及其功能,基于生物信息学方法系统开展了大麦GATA基因家族成员的全基因组鉴定及其结构、共线性、启动子、表达模式等分析.结果表明,在大麦基因组中共鉴定出27个GA-TA基因,依次命名为HvGATA01~HvGATA27,其不均匀分布于7条染色体上.27个HvGATA基因的内含子数在0~7之间,所有成员均包含典型的GATA保守结构域.通过系统进化分析将27个成员划分为5个亚组(S1~S5),其中S5亚组包含9个成员,S3亚组仅1个成员;不同亚族成员间的内含子和外显子分布存在明显差异,且除S3亚组外,其余亚组成员均在单、双子叶植物分化前已存在.经共线性分析,在大麦与水稻、拟南芥、二穗短柄草、大豆、番茄基因组间均存在共线性GATA基因对,但大麦与水稻、二穗短柄草中的共线性基因对明显多于其余三个物种.通过顺式作用元件分析,大麦GATA启动子区富集有光响应元件及激素信号响应元件.HvGATA基因在大麦16个不同组织中的表达存在明显差异,多数HvGATA基因在花序中呈现高表达特征,而在去苞片籽粒中表达量较低,暗示其可能参与大麦开花发育调控.

The GATA gene family is a crucial class of transcriptional regulators in plants,widely in-volved in plant growth,development,and various physiological and biochemical processes.In this study,a comprehensive genome-wide analysis of the barley GATA transcription factor family was performed using bioinformatics approaches,including gene identification,structural characterization,collinearity analysis,promoter element prediction,and expression pattern profiling.The results showed that the barley genome contains a total of 27 GATA genes(designated as HvGATA01-Hv-GATA27),which were unevenly distributed across the 7 chromosomes.Gene structure analysis re-vealed that the number of introns in HvGATA genes ranged from 0 to 7,with distinct intron-exon ar-rangements observed among different subgroups.All members contain the typical GATA conserved domain.Phylogenetic analysis divided them into five subgroups(S1-S5),of which subgroup S5 con-tains 9 members,while subgroup S3 has only one member.Except for S3,the remaining subgroups existed before the divergence of monocots and dicots.Collinearity analysis revealed that collinear GA-TA gene pairs exist between the barley genome and those of rice,A rabidopsis thaliana,Brachypodi-um distachyon,soybean,and tomato.Notably,the number of collinear gene pairs in barley-rice and barley-Brachypodium distachyon comparisons was significantly higher than that in the other three species.Cis-acting element analysis indicated that the promoter regions of barley GAT A genes are en-riched with light-responsive elements and hormone signaling-related elements.Expression profiling showed significant differential expression patterns across 16 barley tissues,with most HvGATA genes exhibiting high expression in inflorescence tissues,while low expression was observed in de-glumed grains,suggesting their potential involvement in barley flowering development regulation.

王孜逸;李嘉伟;耿梓瀚;倪守飞;丛钰莹;刘浩;赵彦宏;胡德昌;王艳芳

鲁东大学生命科学学院,山东烟台 264025||鲁东大学园艺学院,山东烟台 264025鲁东大学园艺学院,山东烟台 264025鲁东大学园艺学院,山东烟台 264025鲁东大学园艺学院,山东烟台 264025鲁东大学园艺学院,山东烟台 264025鲁东大学园艺学院,山东烟台 264025鲁东大学园艺学院,山东烟台 264025鲁东大学生命科学学院,山东烟台 264025鲁东大学生命科学学院,山东烟台 264025

农业科技

大麦GATA基因家族生物信息学全基因组鉴定

BarleyGATA gene familyBioinformaticsGenome-wide identification

《麦类作物学报》 2026 (1)

77-89,13

国家自然科学基金项目(32272159)

10.7606/j.issn.1009-1041.2026.01.09

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