Efficient data filtering with multiple group conditions:a command tool for bioinformatics data analysisOA
Bioinformatics analysis often requires the filtering of multi-datasets,based on frequency or frequency of occurrence,for decisions on retention or deletion.Existing tools for this purpose often present a challenge with complex installation,which necessitate custom coding,thereby impeding efficient data processing activities.To address this issue,Filterx,a user-friendly command line tool that written in C language,was developed that supports multi-condition filtering,based on frequency or occurrence.This tool enables users to complete the data processing tasks through a simple command line,greatly reducing both workload and data processing time.In addition,future development of this tool could facilitate its integration into various bioinformatics data analysis pipelines.
Wenpeng Deng;Jianye Chang;Alun Li;He Xie;Jue Ruan
Hubei Key Laboratory of Agricultural Bioinformatics,College of Informatics,Huazhong Agricultural University,Wuhan 430070,China Shenzhen Branch,Guangdong Laboratory of Lingnan Modern Agriculture,Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs,Agricultural Genomics Institute at Shenzhen,Chinese Academy of Agricultural Sciences,Shenzhen 518120,ChinaShenzhen Branch,Guangdong Laboratory of Lingnan Modern Agriculture,Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs,Agricultural Genomics Institute at Shenzhen,Chinese Academy of Agricultural Sciences,Shenzhen 518120,China UCD School of Biology and Environmental Science,University College Dublin,Dublin 4,D04 N2E5 Belfield,Republic of IrelandShenzhen Branch,Guangdong Laboratory of Lingnan Modern Agriculture,Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs,Agricultural Genomics Institute at Shenzhen,Chinese Academy of Agricultural Sciences,Shenzhen 518120,ChinaTobacco Breeding and Biotechnology Research Center,Yunnan Academy of Tobacco Agricultural Sciences,Kunming 650021,ChinaShenzhen Branch,Guangdong Laboratory of Lingnan Modern Agriculture,Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs,Agricultural Genomics Institute at Shenzhen,Chinese Academy of Agricultural Sciences,Shenzhen 518120,China
生物科学
File processingCommand-line toolSet computeBioinformatics
《aBIOTECH》 2025 (2)
P.274-277,4
supported by grant CNTC-110202101039(JY-16)and YNTC-2022530000241008.
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