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基于网络药理学和分子对接探讨肾衰胶囊治疗慢性肾功能衰竭的作用机制OACSTPCD

Mechanism of Shenshuai Capsule in Treating Chronic Renal Failure Based on Network Pharmacology and Molecular Docking

中文摘要英文摘要

目的:基于网络药理学和分子对接探讨肾衰胶囊治疗慢性肾功能衰竭(chronic renal failure,CRF)的作用机制.方法:利用中药系统药理学数据库与分析平台(Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform,TCMSP)和BATMAN-TCM数据库检索肾衰胶囊的活性成分.基于PubChem数据库和SwissADME平台对活性成分进行筛选,并通过Swiss Target Prediction数据库检索其作用靶点.从OMIM、TTD、GeneCards数据库检索CRF疾病靶点.将肾衰胶囊与CRF的靶点取交集,导入STRING数据库,构建蛋白质-蛋白质相互作用(protein-protein interaction,PPI)网络.通过Cyto-scape 3.10.0 软件和CytoNCA插件对PPI网络进行拓扑分析,从而筛选肾衰胶囊治疗CRF的核心靶点.将交集靶点导入DAVID 数据库,进行基因本体(Gene Ontology,GO)和京都基因与基因组百科全书(Kyoto Encyclopedia of Genes and Genomes,KEGG)富集分析.最后,利用AutoDock Tools 1.5.7 软件对活性成分与核心靶点进行分子对接.结果:肾衰胶囊的活性成分78 个,作用靶点897 个.CRF疾病靶点2 546 个,肾衰胶囊与CRF的交集靶点329 个.肾衰胶囊治疗CRF的核心靶点包括信号转导和转录激活因子3(signal transducer and activator of transcription 3,STAT3)、磷酸肌醇3 激酶调节亚基1(phosphoinositide-3-kinase regulatory subunit 1,PIK3R1)、AKT丝氨酸/苏氨酸激酶1(AKT serine/threonine kinase 1,AKT1)等.GO分析涉及的生物过程包括对异生刺激的反应、蛋白质磷酸化等,分子功能包括蛋白酪氨酸激酶、ATP结合等,细胞组成包括细胞质膜、受体复合物等.KEGG通路主要包括PI3K-AKT信号通路、HIF-1 信号通路、脂质和动脉粥样硬化等.分子对接结果显示,肾衰胶囊关键活性成分与核心靶点具有较强的亲和力和结合活性.结论:肾衰胶囊通过多成分、多靶点、多通路来发挥治疗CRF的作用.

Objective:To investigate the mechanism of Shenshuai Capsule in the treatment of chronic renal failure(CRF)based on net-work pharmacology and molecular docking.How:(Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform,Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform,TCMSP and BATMAN-TCM databases were used to search the active ingredients of kidney failure capsules.Active ingredients were screened based on PubChem database and Swis-sADME platform,and their targets were retrieved through Swiss Target Prediction database.CRF disease targets were retrieved from OMIM,TTD and GeneCards databases.The targets of Shenshuai Capsule and CRF were intersected and imported into STRING database to construct protein-protein interaction(PPI)network.Topological analysis of PPI network was performed by Cytoscape 3.10.0 soft-ware and CytoNCA plug-in to screen the core targets of Shenshuai Capsules for CRF treatment.The intersection targets were imported into the DAVID database for Gene ontology(GO)and Kyoto Encyclopedia of Genes and Genomes(KEGG)enrichment analysis.Final-ly,AutoDock Tools 1.5.7 software was used to perform molecular docking between active ingredients and core targets.Results:There were 78 active ingredients and 897 targets in Shenshuai Capsule.There were 2546 disease targets of CRF,and 329 intersection targets of Shenshuai Capsule and CRF.The core targets of Shenshuai Capsule for CRF treatment include signal transducer and activator of tran-scription 3(STAT3),phosphoinositid-3-kinase regulatory subunit 1(PIK3R1),AKT serine/threonine kinase 1(AKT1),etc.The biological processes involved in GO analysis include the response to heterogenic stimuli and protein phosphorylation,molecular functions include protein tyrosine kinase,ATP binding,etc.and cell composition includes cell plasma membrane and receptor complex.The KEGG pathway mainly includes PI3K-AKT signaling pathway,HIF-1 signaling pathway,lipid,and atherosclerosis.The results of molecular docking showed that the key active ingredients of Shenshuai Capsule had strong affinity and binding activity with the core target.Conclu-sion:Shenshuai Capsule can play the role of treating CRF through multi-component,multi-target and multi-pathway.

涂吉祥;唐桂军;郭泉滢;卢和英

河南中医药大学第一临床医学院,河南 郑州 450000河南省中西医结合医院,河南 郑州 450003

中医学

慢性肾功能衰竭;肾衰胶囊;网络药理学;分子对接

chronic renal failure;Shenshuai Capsule;network pharmacology;molecular docking

《中医学报》 2024 (006)

1314-1322 / 9

河南省中医管理局首批中医拔尖人才培养项目{豫中医科教[2018]35};河南省中医药拔尖课题项目(2019ZYBJ26);河南省科技厅课题项目(212102311088)

10.16368/j.issn.1674-8999.2024.06.219

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