雌雄异型异熟胡桃楸性别分化关键miRNA的鉴定和分析

Identification and analysis of key miRNA for sex differentiation in hermaphroditic Juglans mandshurica Maxim.

来源:中文会议(科协)
中文摘要英文摘要

[背景]雌雄异型异熟是雌雄同株向雌雄异株转变的中间过渡形态。珍稀树种胡桃楸是雌雄同株异型异熟植物,分为雌先型和雄先型两种类型,其在东北地区是良好的经济树种和生态树种。MicroRNA(miRNA)是一类内源性真核非编码RNA,其长度为18-24nt左右。在植物中主要通过靶向互补序列,调控靶基因表达,从而控制许多生物学功能。但由 miRNA介导的胡桃楸性别分化和雌雄异型异熟机制的形成尚不清楚。[结果]本研究利用高通量测序技术对胡桃楸雌雄先型的雌雄花芽进行MicroRNA测序分析,构建了12 个sRNA文库,并与参考基因组进行对比,共鉴定了310 个已知的和278个未知的miRNA,对miRNA的长度、家族等信息进行统计。使用DEG软件包筛选出 129 个显著差异表达的miRNA.对这些差异表达的miRNA层次聚类。使用PSRobots软件包预测了 638个miRNA靶基因,并对这些靶基因进行GO(基因本体论)和KEGG(京都基因和基因组百科全书)富集分析,这些靶基因主要在代谢途径上富集,并且在生殖、花发育和植物激素信号传导路径等成花相关途径中显著富集。推测miR159c-3p,miR156d-3p,miR172d,miR171b,miR164a,miR167a,miR319a,miR399a、miR396t可能是影响胡桃楸性别分化的关键基因,其中miR164a、miR167c和miR171c-5p可能是胡桃楸雌雄异型异熟分化的关键基因。这些关键基因分别调控生长素、赤霉素等植物激素,并靶向许多成花关键基因和转录因子。将这些关键miRNA和其靶基因共同建立了一个预测调控网络。随机选择 9 个差异显著的miRNA 进行实时荧光定量PCR 检测,并结合转录组测序结果进行联合分析,建立了一个差异miRNA-差异mRNA的初级共表达调控网络。[结论]进一步发掘了这些miRNA在胡桃楸性别分化中起到了重要的作用,揭示了miRNA与一些成花相关的重要转录因子之间的调控作用。与转录组数据联合分析为多组学揭示胡桃楸性别分化调控网络奠定基础。推测这些关键miRNA主要以调控胡桃楸靶基因的表达水平,进而调控其激素分泌而影响性别分化,如miR159 家族调控GAMYB基因家族控制赤霉素的分泌,通过赤霉素途径诱导性别分化等。并且形成了雌雄异型异熟这种由雌雄同株和雌雄异株之间的中间过度形态。该研究为最终发现胡桃楸性别分化和雌雄异型异熟的分子机制奠定了研究基础。

[Objective]The dioecious heterozygous maturation is an intermediate transition form from monoecious to dioecious plants.The rare tree species Juglans mandshurica Maxim.is a dioecious heterozygous heteromorphic plant,which is divided into two types:female-first and male-first,and it is a good economic and ecological tree species in Northeast China.microRNA(miRNA)is a class of endogenous eukaryotic non-coding RNAs with a length of about 18-24 nt.In plants,they mainly regulate the expression of target genes by targeting complementary sequences,thus controlling many biological functions.However,the formation of miRNA-mediated sex differentiation and dioecious heterozygous maturation mechanisms in J.mandshurica is still unclear.[Result]In this study,we used high-throughput sequencing technology to analyse the microRNA sequencing of male and female flower buds of the male and female phenotypes of J.mandshurica,constructed 12 sRNA libraries and compared them with the reference genome,and identified a total of 310 known and 278 unknown miRNAs,and counted the lengths,families and other information of the miRNAs.129 significantly differentially expressed miRNAs were screened using the DEG package.these differentially expressed miRNAs were hierarchically clustered.638 miRNA target genes were predicted using the PSRobots package,and these target genes were subjected to GO(Gene Ontology)and KEGG(Kyoto Encyclopedia of Genes and Genomes)enrichment analyses.these target genes were mainly enriched in the metabolic pathways,and were significantly enriched in flower-forming related pathways,such as the reproduction,floral development,and phytohormone signaling pathways.It was hypothesised that miR159c-3p,miR156d-3p,miR172d,miR171b,miR164a,miR167a,miR319a,miR399a,miR396t might be the key genes affecting sex differentiation in J.mandshurica,with miR164a,miR167c,and miR171c-5p probably being the key genes in J.mandshurica miR164a,miR167c and miR171c-5p may be the key genes for sex differentiation in J.mandshurica.These key genes regulate phytohormones such as growth hormone and gibberellin,respectively,and target many flower-forming key genes and transcription factors.A predictive regulatory network was established by combining these key miRNAs and their target genes.Nine miRNAs with significant differences were randomly selected for real-time fluorescence quantitative PCR detection and jointly analysed with transcriptome sequencing results to establish a differential miRNA-differential mRNA primary co-expression regulatory network.[Conclusion]These miRNAs were further uncovered to play an important role in sex differentiation in J.mandshurica,revealing the regulatory roles between miRNAs and some important transcription factors related to flower formation.The joint analysis with transcriptome data lays the foundation for multi-omics to reveal the regulatory network of sex differentiation in J.mandshurica.It is hypothesised that these key miRNAs mainly affect sex differentiation by regulating the expression level of target genes in Nutmeg,which in turn regulates its hormone secretion,such as the miR159 family regulates the GAMYB gene family to control the secretion of gibberellin,which induces sex differentiation through the gibberellin pathway.And the formation of dioecious heterozygous maturation which is an intermediate excessive morphology between monoecious and dioecious.This study lays the research foundation for the final discovery of the molecular mechanism of sex differentiation and dioecious heterozygous maturation in J.mandshurica.

李京泽;张丽杰;

沈阳农业大学,中国 辽宁沈阳,110000##辽宁省林木遗传育种重点实验室,中国 辽宁沈阳,110000;沈阳农业大学,中国 辽宁沈阳,110000##辽宁省林木遗传育种重点实验室,中国 辽宁沈阳,110000;

第八届中国林业学术大会

胡桃楸 miRNA 雌雄异型异熟 性别分化

Juglans mandshurica Maxim miRNA Heterosexualism Sexual differentiation

1274-1290 / 17

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